Strain Fitness in Variovorax sp. SCN45 around GFF3692

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3691 and GFF3692 are separated by 46 nucleotidesGFF3692 and GFF3693 are separated by 1 nucleotides GFF3691 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 190,650 to 191,684 GFF3691 GFF3692 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 191,731 to 192,693 GFF3692 GFF3693 - Oxidoreductase, at 192,695 to 193,858 GFF3693 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.299 kb on - strand, within GFF3691at 191.307 kb on + strand, within GFF3691at 191.308 kb on - strand, within GFF3691at 191.347 kb on - strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.616 kb on + strandat 191.616 kb on + strandat 191.616 kb on + strandat 191.617 kb on - strandat 191.873 kb on - strand, within GFF3692at 191.873 kb on - strand, within GFF3692at 192.077 kb on - strand, within GFF3692at 192.077 kb on - strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.128 kb on - strand, within GFF3692at 192.128 kb on - strand, within GFF3692at 192.172 kb on + strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.310 kb on + strand, within GFF3692at 192.310 kb on + strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.356 kb on - strand, within GFF3692at 192.544 kb on + strand, within GFF3692at 192.544 kb on + strand, within GFF3692at 192.545 kb on - strand, within GFF3692at 192.563 kb on - strand, within GFF3692at 192.563 kb on - strand, within GFF3692at 192.670 kb on + strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strandat 193.115 kb on + strand, within GFF3693at 193.115 kb on + strand, within GFF3693at 193.116 kb on - strand, within GFF3693at 193.116 kb on - strand, within GFF3693at 193.121 kb on + strand, within GFF3693at 193.121 kb on + strand, within GFF3693at 193.121 kb on + strand, within GFF3693at 193.122 kb on - strand, within GFF3693at 193.122 kb on - strand, within GFF3693at 193.205 kb on + strand, within GFF3693at 193.206 kb on - strand, within GFF3693at 193.206 kb on - strand, within GFF3693at 193.359 kb on + strand, within GFF3693at 193.359 kb on + strand, within GFF3693at 193.359 kb on + strand, within GFF3693at 193.359 kb on + strand, within GFF3693at 193.360 kb on - strand, within GFF3693at 193.360 kb on - strand, within GFF3693

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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191,146 - GFF3691 0.48 -1.1
191,146 - GFF3691 0.48 -1.8
191,146 - GFF3691 0.48 +0.1
191,196 + GFF3691 0.53 +0.9
191,196 + GFF3691 0.53 -1.0
191,196 + GFF3691 0.53 -0.5
191,197 - GFF3691 0.53 +2.6
191,197 - GFF3691 0.53 +0.4
191,197 - GFF3691 0.53 -0.2
191,197 - GFF3691 0.53 -0.4
191,208 + GFF3691 0.54 -1.0
191,208 + GFF3691 0.54 +0.1
191,209 - GFF3691 0.54 -1.2
191,209 - GFF3691 0.54 -1.3
191,211 + GFF3691 0.54 -2.4
191,211 + GFF3691 0.54 -2.5
191,211 + GFF3691 0.54 +0.8
191,211 + GFF3691 0.54 -0.2
191,212 - GFF3691 0.54 +1.4
191,212 - GFF3691 0.54 -0.2
191,281 + GFF3691 0.61 +0.5
191,281 + GFF3691 0.61 -1.3
191,282 - GFF3691 0.61 -0.2
191,282 - GFF3691 0.61 -2.5
191,299 - GFF3691 0.63 -1.2
191,307 + GFF3691 0.63 +0.2
191,308 - GFF3691 0.64 -0.4
191,347 - GFF3691 0.67 -2.8
191,385 + GFF3691 0.71 +0.8
191,385 + GFF3691 0.71 -1.4
191,385 + GFF3691 0.71 -0.1
191,385 + GFF3691 0.71 -0.6
191,385 + GFF3691 0.71 +0.8
191,385 + GFF3691 0.71 -0.4
191,386 - GFF3691 0.71 +0.3
191,386 - GFF3691 0.71 -1.3
191,427 + GFF3691 0.75 -0.5
191,427 + GFF3691 0.75 +1.2
191,427 + GFF3691 0.75 +1.0
191,427 + GFF3691 0.75 -1.4
191,428 - GFF3691 0.75 -0.4
191,428 - GFF3691 0.75 -2.1
191,428 - GFF3691 0.75 +0.8
191,616 + -1.5
191,616 + -0.6
191,616 + -0.0
191,617 - -0.4
191,873 - GFF3692 0.15 -2.0
191,873 - GFF3692 0.15 -2.3
192,077 - GFF3692 0.36 -1.8
192,077 - GFF3692 0.36 -0.8
192,127 + GFF3692 0.41 -1.4
192,127 + GFF3692 0.41 -1.0
192,127 + GFF3692 0.41 -0.8
192,128 - GFF3692 0.41 +0.2
192,128 - GFF3692 0.41 -3.3
192,172 + GFF3692 0.46 -0.4
192,173 - GFF3692 0.46 +1.3
192,173 - GFF3692 0.46 -1.9
192,173 - GFF3692 0.46 +2.9
192,173 - GFF3692 0.46 -2.3
192,310 + GFF3692 0.60 +0.3
192,310 + GFF3692 0.60 +0.7
192,311 - GFF3692 0.60 -0.6
192,311 - GFF3692 0.60 -0.8
192,311 - GFF3692 0.60 +0.0
192,356 - GFF3692 0.65 -2.6
192,544 + GFF3692 0.84 -1.3
192,544 + GFF3692 0.84 -1.2
192,545 - GFF3692 0.85 -2.1
192,563 - GFF3692 0.86 -0.5
192,563 - GFF3692 0.86 -1.8
192,670 + +1.0
192,671 - -2.7
192,671 - -1.0
192,671 - -0.2
192,671 - -0.1
192,671 - -0.5
193,115 + GFF3693 0.36 -0.8
193,115 + GFF3693 0.36 -1.1
193,116 - GFF3693 0.36 +0.7
193,116 - GFF3693 0.36 -1.8
193,121 + GFF3693 0.37 +0.6
193,121 + GFF3693 0.37 -0.6
193,121 + GFF3693 0.37 +2.4
193,122 - GFF3693 0.37 +0.2
193,122 - GFF3693 0.37 +0.7
193,205 + GFF3693 0.44 -1.0
193,206 - GFF3693 0.44 +0.6
193,206 - GFF3693 0.44 +0.7
193,359 + GFF3693 0.57 -0.1
193,359 + GFF3693 0.57 -2.1
193,359 + GFF3693 0.57 +0.2
193,359 + GFF3693 0.57 -1.7
193,360 - GFF3693 0.57 +0.4
193,360 - GFF3693 0.57 +0.4

Or see this region's nucleotide sequence