Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3574 and GFF3575 overlap by 4 nucleotides GFF3575 and GFF3576 overlap by 4 nucleotides GFF3576 and GFF3577 overlap by 4 nucleotides
GFF3574 - hypothetical protein, at 86,391 to 87,233
GFF3574
GFF3575 - no description, at 87,230 to 87,916
GFF3575
GFF3576 - no description, at 87,913 to 88,554
GFF3576
GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441
GFF3577
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 86.928 kb on + strand, within GFF3574 at 86.928 kb on + strand, within GFF3574 at 86.929 kb on - strand, within GFF3574 at 87.422 kb on + strand, within GFF3575 at 87.422 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 88.074 kb on + strand, within GFF3576 at 88.074 kb on + strand, within GFF3576 at 88.075 kb on - strand, within GFF3576 at 88.240 kb on + strand, within GFF3576 at 88.241 kb on - strand, within GFF3576 at 88.633 kb on + strand at 88.633 kb on + strand at 88.633 kb on + strand at 88.634 kb on - strand at 88.720 kb on + strand, within GFF3577 at 88.720 kb on + strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.930 kb on + strand, within GFF3577 at 88.931 kb on - strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.248 kb on + strand, within GFF3577
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 86,928 + GFF3574 0.64 -1.1 86,928 + GFF3574 0.64 -1.1 86,929 - GFF3574 0.64 -0.2 87,422 + GFF3575 0.28 +0.2 87,422 + GFF3575 0.28 -0.0 87,722 + GFF3575 0.72 +0.9 87,722 + GFF3575 0.72 +1.1 87,722 + GFF3575 0.72 -1.9 87,723 - GFF3575 0.72 +0.2 87,723 - GFF3575 0.72 +2.2 87,723 - GFF3575 0.72 +0.4 88,074 + GFF3576 0.25 -0.2 88,074 + GFF3576 0.25 +2.1 88,075 - GFF3576 0.25 +0.4 88,240 + GFF3576 0.51 +1.1 88,241 - GFF3576 0.51 -0.4 88,633 + -2.2 88,633 + -0.4 88,633 + -2.2 88,634 - -1.3 88,720 + GFF3577 0.19 -1.1 88,720 + GFF3577 0.19 -1.5 88,721 - GFF3577 0.19 +1.1 88,721 - GFF3577 0.19 -0.5 88,930 + GFF3577 0.43 +1.9 88,931 - GFF3577 0.43 +1.5 89,089 + GFF3577 0.60 -0.3 89,089 + GFF3577 0.60 +0.3 89,125 + GFF3577 0.64 -1.1 89,125 + GFF3577 0.64 +2.8 89,125 + GFF3577 0.64 +0.1 89,125 + GFF3577 0.64 -1.5 89,125 + GFF3577 0.64 -1.1 89,125 + GFF3577 0.64 -1.6 89,125 + GFF3577 0.64 -0.0 89,125 + GFF3577 0.64 +3.8 89,125 + GFF3577 0.64 +1.2 89,125 + GFF3577 0.64 -1.8 89,125 + GFF3577 0.64 -2.9 89,125 + GFF3577 0.64 +1.7 89,125 + GFF3577 0.64 +0.0 89,125 + GFF3577 0.64 -0.7 89,126 - GFF3577 0.65 -1.0 89,126 - GFF3577 0.65 +1.3 89,126 - GFF3577 0.65 +1.0 89,126 - GFF3577 0.65 -1.3 89,126 - GFF3577 0.65 -1.4 89,126 - GFF3577 0.65 +1.3 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 +0.9 89,126 - GFF3577 0.65 -0.8 89,126 - GFF3577 0.65 -1.3 89,126 - GFF3577 0.65 +2.1 89,126 - GFF3577 0.65 -1.2 89,126 - GFF3577 0.65 -1.8 89,126 - GFF3577 0.65 +0.6 89,248 + GFF3577 0.78 -1.8 89,248 + GFF3577 0.78 -1.1
Or see this region's nucleotide sequence