Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3450 and GFF3451 are separated by 16 nucleotides GFF3451 and GFF3452 are separated by 16 nucleotides
GFF3450 - Transcriptional regulator, LacI family, at 272,510 to 273,544
GFF3450
GFF3451 - no description, at 273,561 to 273,908
GFF3451
GFF3452 - hypothetical protein, at 273,925 to 275,598
GFF3452
Position (kb) 273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 272.682 kb on - strand, within GFF3450 at 272.816 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.198 kb on - strand, within GFF3450 at 273.299 kb on + strand, within GFF3450 at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.733 kb on + strand, within GFF3451 at 273.926 kb on + strand at 273.927 kb on - strand at 273.927 kb on - strand at 273.927 kb on - strand at 274.116 kb on - strand, within GFF3452 at 274.116 kb on - strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.368 kb on - strand, within GFF3452 at 274.368 kb on - strand, within GFF3452 at 274.811 kb on + strand, within GFF3452 at 274.812 kb on - strand, within GFF3452 at 274.854 kb on - strand, within GFF3452
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 272,682 - GFF3450 0.17 -0.4 272,816 + GFF3450 0.30 +0.3 273,197 + GFF3450 0.66 +0.1 273,197 + GFF3450 0.66 -2.5 273,197 + GFF3450 0.66 +0.1 273,198 - GFF3450 0.66 -0.4 273,299 + GFF3450 0.76 +1.2 273,562 + +0.7 273,562 + -1.6 273,562 + -0.4 273,562 + -1.4 273,562 + -2.3 273,563 - -0.6 273,563 - -1.3 273,563 - -2.0 273,733 + GFF3451 0.49 -1.9 273,926 + +0.1 273,927 - +1.3 273,927 - -0.5 273,927 - -1.5 274,116 - GFF3452 0.11 +1.0 274,116 - GFF3452 0.11 -1.2 274,367 + GFF3452 0.26 -1.6 274,367 + GFF3452 0.26 +0.4 274,367 + GFF3452 0.26 -0.1 274,367 + GFF3452 0.26 +1.4 274,367 + GFF3452 0.26 +0.8 274,367 + GFF3452 0.26 -0.7 274,368 - GFF3452 0.26 -0.7 274,368 - GFF3452 0.26 +1.0 274,811 + GFF3452 0.53 -2.3 274,812 - GFF3452 0.53 +0.6 274,854 - GFF3452 0.55 +0.3
Or see this region's nucleotide sequence