Strain Fitness in Variovorax sp. SCN45 around GFF3339

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3337 and GFF3338 are separated by 139 nucleotidesGFF3338 and GFF3339 are separated by 15 nucleotidesGFF3339 and GFF3340 are separated by 16 nucleotidesGFF3340 and GFF3341 overlap by 1 nucleotides GFF3337 - 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170), at 161,986 to 162,585 GFF3337 GFF3338 - Threonine efflux protein, at 162,725 to 163,339 GFF3338 GFF3339 - Chromosome (plasmid) partitioning protein ParA, at 163,355 to 164,275 GFF3339 GFF3340 - FIG00932469: hypothetical protein, at 164,292 to 164,837 GFF3340 GFF3341 - Chromosome (plasmid) partitioning protein ParB, at 164,837 to 165,805 GFF3341 Position (kb) 163 164 165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.359 kb on + strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.611 kb on - strandat 162.668 kb on + strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.744 kb on - strandat 162.744 kb on - strandat 162.930 kb on - strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.202 kb on + strand, within GFF3338at 163.203 kb on - strand, within GFF3338at 164.373 kb on + strand, within GFF3340at 164.373 kb on + strand, within GFF3340at 164.373 kb on + strand, within GFF3340at 164.373 kb on + strand, within GFF3340at 164.373 kb on + strand, within GFF3340at 164.373 kb on + strand, within GFF3340at 164.374 kb on - strand, within GFF3340at 164.374 kb on - strand, within GFF3340at 164.374 kb on - strand, within GFF3340at 164.374 kb on - strand, within GFF3340at 164.682 kb on + strand, within GFF3340at 164.683 kb on - strand, within GFF3340

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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162,358 + GFF3337 0.62 -1.0
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -0.5
162,358 + GFF3337 0.62 -1.0
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 -1.5
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 -1.7
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 +0.7
162,358 + GFF3337 0.62 -1.5
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 +1.3
162,358 + GFF3337 0.62 -3.4
162,358 + GFF3337 0.62 -1.6
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -0.8
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -2.0
162,358 + GFF3337 0.62 +0.0
162,358 + GFF3337 0.62 +1.2
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -1.5
162,358 + GFF3337 0.62 -1.5
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -1.3
162,358 + GFF3337 0.62 +0.5
162,358 + GFF3337 0.62 +0.5
162,359 + GFF3337 0.62 +1.4
162,359 - GFF3337 0.62 -2.4
162,359 - GFF3337 0.62 +0.8
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 +1.7
162,359 - GFF3337 0.62 -1.1
162,359 - GFF3337 0.62 -2.8
162,359 - GFF3337 0.62 +0.6
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 -0.0
162,359 - GFF3337 0.62 -1.8
162,359 - GFF3337 0.62 +0.2
162,359 - GFF3337 0.62 -1.4
162,359 - GFF3337 0.62 -2.3
162,359 - GFF3337 0.62 +0.6
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 +0.7
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -2.4
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 -0.3
162,359 - GFF3337 0.62 -0.8
162,359 - GFF3337 0.62 +0.8
162,359 - GFF3337 0.62 +0.7
162,359 - GFF3337 0.62 +0.9
162,359 - GFF3337 0.62 -3.0
162,359 - GFF3337 0.62 -0.0
162,459 + GFF3337 0.79 -3.3
162,459 + GFF3337 0.79 -0.6
162,459 + GFF3337 0.79 +2.1
162,459 + GFF3337 0.79 -0.9
162,460 - GFF3337 0.79 -1.5
162,460 - GFF3337 0.79 -2.1
162,460 - GFF3337 0.79 +1.6
162,611 - -1.9
162,668 + +1.4
162,669 - +2.4
162,669 - -1.2
162,669 - -0.6
162,743 + -1.4
162,743 + +1.4
162,744 - -3.0
162,744 - -1.5
162,930 - GFF3338 0.33 -1.7
162,971 + GFF3338 0.40 -1.0
162,971 + GFF3338 0.40 -0.4
162,971 + GFF3338 0.40 -0.4
162,971 + GFF3338 0.40 -4.0
162,971 + GFF3338 0.40 +0.1
162,971 + GFF3338 0.40 -0.5
162,971 + GFF3338 0.40 -2.3
162,971 + GFF3338 0.40 -0.6
162,971 + GFF3338 0.40 -1.0
162,971 + GFF3338 0.40 -0.1
162,971 + GFF3338 0.40 -2.6
162,971 + GFF3338 0.40 -0.3
162,971 + GFF3338 0.40 -1.0
162,971 + GFF3338 0.40 -0.8
162,971 + GFF3338 0.40 -1.2
162,971 + GFF3338 0.40 -1.0
162,972 - GFF3338 0.40 +0.4
162,972 - GFF3338 0.40 -1.7
162,972 - GFF3338 0.40 -3.3
162,972 - GFF3338 0.40 +1.4
162,972 - GFF3338 0.40 -0.4
162,972 - GFF3338 0.40 -2.1
162,972 - GFF3338 0.40 -1.0
162,972 - GFF3338 0.40 -1.0
162,972 - GFF3338 0.40 -0.8
162,972 - GFF3338 0.40 -1.8
162,972 - GFF3338 0.40 -0.9
163,103 + GFF3338 0.61 -1.1
163,103 + GFF3338 0.61 +0.8
163,103 + GFF3338 0.61 -2.0
163,103 + GFF3338 0.61 +0.8
163,103 + GFF3338 0.61 -0.8
163,103 + GFF3338 0.61 -0.4
163,103 + GFF3338 0.61 +0.4
163,103 + GFF3338 0.61 -0.3
163,103 + GFF3338 0.61 -1.8
163,103 + GFF3338 0.61 +2.6
163,103 + GFF3338 0.61 -1.3
163,103 + GFF3338 0.61 -1.4
163,103 + GFF3338 0.61 -0.2
163,103 + GFF3338 0.61 -1.3
163,103 + GFF3338 0.61 -1.2
163,103 + GFF3338 0.61 -2.5
163,104 - GFF3338 0.62 -1.6
163,104 - GFF3338 0.62 +0.4
163,104 - GFF3338 0.62 +1.2
163,104 - GFF3338 0.62 +1.5
163,104 - GFF3338 0.62 -1.3
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 +1.2
163,104 - GFF3338 0.62 +2.1
163,104 - GFF3338 0.62 +0.3
163,104 - GFF3338 0.62 -1.7
163,104 - GFF3338 0.62 +0.4
163,104 - GFF3338 0.62 -0.6
163,104 - GFF3338 0.62 +1.4
163,104 - GFF3338 0.62 -2.8
163,104 - GFF3338 0.62 -1.6
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 -2.3
163,104 - GFF3338 0.62 -1.7
163,104 - GFF3338 0.62 -2.0
163,104 - GFF3338 0.62 +1.3
163,104 - GFF3338 0.62 -0.8
163,104 - GFF3338 0.62 -0.6
163,104 - GFF3338 0.62 -1.7
163,104 - GFF3338 0.62 -0.9
163,104 - GFF3338 0.62 -0.6
163,104 - GFF3338 0.62 +0.4
163,104 - GFF3338 0.62 +0.2
163,104 - GFF3338 0.62 -0.8
163,104 - GFF3338 0.62 -1.1
163,202 + GFF3338 0.78 +1.2
163,203 - GFF3338 0.78 -1.5
164,373 + GFF3340 0.15 +0.7
164,373 + GFF3340 0.15 -1.8
164,373 + GFF3340 0.15 -0.8
164,373 + GFF3340 0.15 +1.1
164,373 + GFF3340 0.15 +1.4
164,373 + GFF3340 0.15 -0.6
164,374 - GFF3340 0.15 +0.1
164,374 - GFF3340 0.15 +0.1
164,374 - GFF3340 0.15 -1.7
164,374 - GFF3340 0.15 +1.8
164,682 + GFF3340 0.71 -0.8
164,683 - GFF3340 0.72 +0.6

Or see this region's nucleotide sequence