Strain Fitness in Variovorax sp. SCN45 around GFF317

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF315 and GFF316 are separated by 16 nucleotidesGFF316 and GFF317 are separated by 5 nucleotidesGFF317 and GFF318 are separated by 98 nucleotides GFF315 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 348,175 to 349,887 GFF315 GFF316 - Transmembrane protein, at 349,904 to 350,548 GFF316 GFF317 - Acyl carrier protein, at 350,554 to 350,865 GFF317 GFF318 - Uncharacterized protein YjgR, at 350,964 to 352,481 GFF318 Position (kb) 350 351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 349.712 kb on + strand, within GFF315at 349.713 kb on - strand, within GFF315at 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.166 kb on + strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.502 kb on + strandat 350.502 kb on + strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.559 kb on + strandat 350.560 kb on - strandat 350.560 kb on - strandat 350.720 kb on + strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.851 kb on + strandat 350.851 kb on + strandat 350.851 kb on + strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.881 kb on - strandat 350.881 kb on - strandat 350.881 kb on - strandat 350.894 kb on - strandat 350.914 kb on + strandat 350.914 kb on + strandat 350.915 kb on - strandat 350.915 kb on - strandat 350.915 kb on - strandat 350.931 kb on + strandat 350.931 kb on + strandat 350.932 kb on - strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.964 kb on - strandat 350.964 kb on - strandat 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.663 kb on + strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.853 kb on - strand, within GFF318

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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349,712 + GFF315 0.90 +0.1
349,713 - GFF315 0.90 -1.9
349,944 + -0.1
349,944 + +1.2
349,944 + +0.3
349,944 + -0.6
349,945 - -0.3
349,945 - -0.9
349,945 - +0.0
349,945 - -1.4
349,945 - -1.3
349,945 - +0.7
349,945 - -0.7
349,975 + GFF316 0.11 -1.3
349,975 + GFF316 0.11 -0.1
349,975 + GFF316 0.11 -1.3
349,975 + GFF316 0.11 +0.4
349,975 + GFF316 0.11 -1.3
349,975 + GFF316 0.11 +0.7
349,975 + GFF316 0.11 +2.8
349,976 - GFF316 0.11 +1.4
349,976 - GFF316 0.11 -2.0
349,976 - GFF316 0.11 -0.9
350,097 + GFF316 0.30 -0.0
350,097 + GFF316 0.30 -1.1
350,097 + GFF316 0.30 -2.5
350,097 + GFF316 0.30 -1.1
350,097 + GFF316 0.30 -0.9
350,097 + GFF316 0.30 +0.1
350,097 + GFF316 0.30 +2.1
350,097 + GFF316 0.30 -0.2
350,098 - GFF316 0.30 +0.5
350,098 - GFF316 0.30 +0.1
350,098 - GFF316 0.30 +0.5
350,098 - GFF316 0.30 -1.4
350,098 - GFF316 0.30 -1.3
350,098 - GFF316 0.30 -3.3
350,098 - GFF316 0.30 +2.0
350,133 + GFF316 0.36 -2.0
350,133 + GFF316 0.36 -0.6
350,134 - GFF316 0.36 -2.2
350,134 - GFF316 0.36 -1.4
350,134 - GFF316 0.36 -0.3
350,134 - GFF316 0.36 -1.1
350,134 - GFF316 0.36 -2.5
350,166 + GFF316 0.41 -1.7
350,167 - GFF316 0.41 -1.3
350,167 - GFF316 0.41 -0.9
350,167 - GFF316 0.41 -0.0
350,298 + GFF316 0.61 +1.6
350,298 + GFF316 0.61 -0.2
350,298 + GFF316 0.61 -1.3
350,298 + GFF316 0.61 +0.3
350,298 + GFF316 0.61 +3.8
350,298 + GFF316 0.61 -1.3
350,298 + GFF316 0.61 -0.9
350,298 + GFF316 0.61 +1.0
350,298 + GFF316 0.61 +0.8
350,298 + GFF316 0.61 -0.9
350,298 + GFF316 0.61 +0.2
350,298 + GFF316 0.61 -0.5
350,299 - GFF316 0.61 -0.9
350,299 - GFF316 0.61 -0.3
350,299 - GFF316 0.61 +0.1
350,299 - GFF316 0.61 -0.9
350,299 - GFF316 0.61 +2.5
350,299 - GFF316 0.61 -0.4
350,299 - GFF316 0.61 -0.1
350,299 - GFF316 0.61 -2.3
350,299 - GFF316 0.61 -0.3
350,299 - GFF316 0.61 +3.3
350,299 - GFF316 0.61 -1.4
350,299 - GFF316 0.61 -1.4
350,299 - GFF316 0.61 +1.1
350,502 + +0.7
350,502 + -1.8
350,503 - -0.9
350,503 - -1.3
350,503 - -1.9
350,503 - +0.3
350,503 - +1.5
350,503 - -1.4
350,503 - -3.3
350,503 - -0.7
350,559 + -1.0
350,560 - -0.1
350,560 - +0.7
350,720 + GFF317 0.53 +1.7
350,721 - GFF317 0.54 -0.0
350,721 - GFF317 0.54 +0.7
350,851 + +2.4
350,851 + +0.4
350,851 + -0.8
350,852 - -2.3
350,852 - -1.8
350,880 + -1.0
350,880 + -2.3
350,880 + -1.0
350,880 + -0.6
350,881 - -2.5
350,881 - -1.7
350,881 - -0.2
350,894 - -2.0
350,914 + +0.8
350,914 + +0.8
350,915 - -0.5
350,915 - +1.1
350,915 - +0.0
350,931 + +0.1
350,931 + -2.3
350,932 - -2.2
350,946 + -3.8
350,946 + -3.0
350,946 + +0.4
350,946 + -1.3
350,946 + -0.4
350,946 + +0.2
350,947 - -1.1
350,947 - -2.1
350,947 - +0.5
350,963 + -0.4
350,963 + -2.3
350,963 + +1.6
350,963 + -1.0
350,963 + -1.6
350,964 - +0.6
350,964 - -0.6
351,403 + GFF318 0.29 -0.0
351,403 + GFF318 0.29 +2.3
351,403 + GFF318 0.29 -2.1
351,403 + GFF318 0.29 -1.3
351,404 - GFF318 0.29 +2.0
351,404 - GFF318 0.29 -0.9
351,404 - GFF318 0.29 -3.7
351,441 + GFF318 0.31 -0.1
351,441 + GFF318 0.31 -0.1
351,441 + GFF318 0.31 +1.1
351,441 + GFF318 0.31 -0.3
351,441 + GFF318 0.31 +0.6
351,441 + GFF318 0.31 -1.4
351,441 + GFF318 0.31 -0.7
351,442 - GFF318 0.31 +0.8
351,442 - GFF318 0.31 +0.6
351,442 - GFF318 0.31 -0.6
351,442 - GFF318 0.31 +0.4
351,442 - GFF318 0.31 -0.5
351,442 - GFF318 0.31 -0.4
351,442 - GFF318 0.31 -1.6
351,663 + GFF318 0.46 -1.3
351,664 - GFF318 0.46 +0.1
351,664 - GFF318 0.46 +0.1
351,664 - GFF318 0.46 +1.7
351,664 - GFF318 0.46 -3.4
351,664 - GFF318 0.46 -0.3
351,664 - GFF318 0.46 -0.6
351,852 + GFF318 0.58 -0.9
351,852 + GFF318 0.58 -1.2
351,852 + GFF318 0.58 +0.6
351,852 + GFF318 0.58 -2.4
351,853 - GFF318 0.59 +1.0

Or see this region's nucleotide sequence