Strain Fitness in Variovorax sp. SCN45 around GFF3109

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3108 and GFF3109 are separated by 115 nucleotidesGFF3109 and GFF3110 overlap by 4 nucleotides GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350 GFF3108 GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299 GFF3109 GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110 Position (kb) 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 535.887 kb on - strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.189 kb on + strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.270 kb on + strandat 536.270 kb on + strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.273 kb on + strandat 536.273 kb on + strandat 536.274 kb on - strandat 536.274 kb on - strandat 536.274 kb on - strandat 536.366 kb on + strandat 536.367 kb on - strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.585 kb on + strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.599 kb on - strand, within GFF3109at 536.649 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.823 kb on + strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.148 kb on - strand, within GFF3109at 537.285 kb on + strandat 537.285 kb on + strandat 537.285 kb on + strandat 537.286 kb on - strandat 537.286 kb on - strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.605 kb on + strand, within GFF3110at 537.605 kb on + strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.753 kb on - strand, within GFF3110at 537.874 kb on - strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.047 kb on - strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.197 kb on - strand, within GFF3110

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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535,887 - GFF3108 0.54 +0.6
535,970 + GFF3108 0.62 +0.3
535,970 + GFF3108 0.62 +1.9
535,970 + GFF3108 0.62 -0.1
535,970 + GFF3108 0.62 +0.3
535,970 + GFF3108 0.62 -3.9
535,970 + GFF3108 0.62 +1.0
536,174 + GFF3108 0.82 -2.3
536,174 + GFF3108 0.82 +0.0
536,174 + GFF3108 0.82 -0.2
536,174 + GFF3108 0.82 -0.6
536,174 + GFF3108 0.82 +1.9
536,174 + GFF3108 0.82 -0.4
536,174 + GFF3108 0.82 +0.5
536,174 + GFF3108 0.82 -0.8
536,175 - GFF3108 0.82 +1.4
536,175 - GFF3108 0.82 -0.6
536,175 - GFF3108 0.82 +0.5
536,189 + GFF3108 0.84 -1.1
536,190 - GFF3108 0.84 -1.9
536,190 - GFF3108 0.84 +0.2
536,190 - GFF3108 0.84 -0.4
536,270 + -0.7
536,270 + +0.3
536,271 - -1.6
536,271 - -0.4
536,271 - -0.9
536,271 - +2.4
536,273 + +0.6
536,273 + -0.0
536,274 - -0.4
536,274 - +1.1
536,274 - +0.2
536,366 + -2.0
536,367 - -1.1
536,426 + +1.3
536,426 + -1.3
536,426 + -2.2
536,426 + -0.3
536,426 + -0.8
536,427 - -2.1
536,427 - +0.3
536,427 - -2.3
536,585 + GFF3109 0.14 +0.3
536,586 - GFF3109 0.14 -1.8
536,586 - GFF3109 0.14 -2.6
536,599 - GFF3109 0.16 -0.4
536,649 + GFF3109 0.22 -0.4
536,661 + GFF3109 0.23 -1.4
536,661 + GFF3109 0.23 -0.9
536,661 + GFF3109 0.23 -2.1
536,662 - GFF3109 0.24 +2.5
536,662 - GFF3109 0.24 +1.1
536,662 - GFF3109 0.24 -0.2
536,662 - GFF3109 0.24 -1.1
536,662 - GFF3109 0.24 -1.6
536,662 - GFF3109 0.24 -0.9
536,662 - GFF3109 0.24 +0.3
536,745 + GFF3109 0.33 -0.5
536,745 + GFF3109 0.33 -0.4
536,745 + GFF3109 0.33 -0.9
536,746 - GFF3109 0.34 +0.9
536,746 - GFF3109 0.34 +0.0
536,746 - GFF3109 0.34 -2.1
536,746 - GFF3109 0.34 -4.7
536,823 + GFF3109 0.43 +0.8
536,824 - GFF3109 0.43 -2.2
536,824 - GFF3109 0.43 -1.7
537,147 + GFF3109 0.82 -2.3
537,147 + GFF3109 0.82 -0.3
537,148 - GFF3109 0.82 -1.3
537,285 + -1.1
537,285 + -0.4
537,285 + -1.8
537,286 - -0.4
537,286 - +0.3
537,422 + +1.1
537,422 + -0.9
537,422 + -1.3
537,422 + +1.9
537,423 - -0.7
537,423 - +0.3
537,423 - -0.2
537,423 - +0.8
537,423 - -0.6
537,423 - -0.9
537,605 + GFF3110 0.23 -2.3
537,605 + GFF3110 0.23 -0.3
537,606 - GFF3110 0.23 +0.7
537,606 - GFF3110 0.23 -1.8
537,606 - GFF3110 0.23 -2.5
537,606 - GFF3110 0.23 -1.3
537,606 - GFF3110 0.23 -1.3
537,606 - GFF3110 0.23 +1.3
537,606 - GFF3110 0.23 +0.8
537,606 - GFF3110 0.23 -1.6
537,617 + GFF3110 0.24 -1.6
537,617 + GFF3110 0.24 -1.0
537,617 + GFF3110 0.24 +0.0
537,618 - GFF3110 0.24 +0.6
537,618 - GFF3110 0.24 -0.5
537,618 - GFF3110 0.24 -1.7
537,753 - GFF3110 0.34 -1.1
537,874 - GFF3110 0.43 -0.3
538,046 + GFF3110 0.56 -1.4
538,046 + GFF3110 0.56 -1.6
538,046 + GFF3110 0.56 -1.4
538,047 - GFF3110 0.56 +0.5
538,196 + GFF3110 0.67 -3.1
538,196 + GFF3110 0.67 -2.2
538,197 - GFF3110 0.67 -1.7
538,197 - GFF3110 0.67 -1.9

Or see this region's nucleotide sequence