Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3057 and GFF3058 are separated by 26 nucleotides GFF3058 and GFF3059 are separated by 9 nucleotides GFF3059 and GFF3060 are separated by 108 nucleotides
GFF3057 - Aspartate aminotransferase (EC 2.6.1.1), at 491,028 to 492,242
GFF3057
GFF3058 - Demethylmenaquinone methyltransferase-like protein, at 492,269 to 492,940
GFF3058
GFF3059 - Transcriptional regulator, LysR family, at 492,950 to 493,876
GFF3059
GFF3060 - Dihydrodipicolinate synthase family, at 493,985 to 494,923
GFF3060
Position (kb) 492
493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 492.012 kb on + strand, within GFF3057 at 492.012 kb on + strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.019 kb on - strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.325 kb on - strand at 492.408 kb on - strand, within GFF3058 at 492.581 kb on + strand, within GFF3058 at 492.582 kb on - strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.699 kb on - strand, within GFF3058 at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.264 kb on - strand, within GFF3059 at 493.264 kb on - strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.893 kb on + strand at 493.893 kb on + strand at 493.893 kb on + strand at 493.893 kb on + strand at 493.894 kb on - strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.912 kb on + strand at 493.913 kb on - strand at 494.441 kb on + strand, within GFF3060 at 494.441 kb on + strand, within GFF3060 at 494.442 kb on - strand, within GFF3060 at 494.480 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.523 kb on - strand, within GFF3060 at 494.591 kb on + strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.808 kb on - strand, within GFF3060 at 494.808 kb on - strand, within GFF3060
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 492,012 + GFF3057 0.81 -0.9 492,012 + GFF3057 0.81 -1.3 492,013 - GFF3057 0.81 -0.1 492,013 - GFF3057 0.81 +0.2 492,013 - GFF3057 0.81 -1.2 492,013 - GFF3057 0.81 -1.1 492,018 + GFF3057 0.81 -1.6 492,018 + GFF3057 0.81 -0.9 492,018 + GFF3057 0.81 -2.4 492,018 + GFF3057 0.81 +1.2 492,019 - GFF3057 0.82 -1.1 492,096 + GFF3057 0.88 +1.9 492,096 + GFF3057 0.88 -2.8 492,096 + GFF3057 0.88 -1.1 492,097 - GFF3057 0.88 -2.1 492,097 - GFF3057 0.88 +0.9 492,097 - GFF3057 0.88 +3.0 492,097 - GFF3057 0.88 -2.2 492,097 - GFF3057 0.88 -0.9 492,097 - GFF3057 0.88 +1.8 492,325 - -0.5 492,408 - GFF3058 0.21 -3.3 492,581 + GFF3058 0.46 +0.5 492,582 - GFF3058 0.47 +0.6 492,668 + GFF3058 0.59 -0.6 492,668 + GFF3058 0.59 +0.3 492,668 + GFF3058 0.59 +1.2 492,668 + GFF3058 0.59 -0.4 492,668 + GFF3058 0.59 +0.8 492,669 - GFF3058 0.60 -3.2 492,669 - GFF3058 0.60 -2.6 492,699 - GFF3058 0.64 -0.7 493,025 + -0.9 493,025 + +0.7 493,025 + -2.0 493,025 + -1.4 493,025 + -0.2 493,025 + +0.4 493,025 + +1.1 493,025 + +0.5 493,026 - -2.6 493,026 - +1.7 493,026 - -2.3 493,026 - +0.2 493,026 - -0.8 493,026 - +0.4 493,026 - +0.2 493,026 - -0.7 493,264 - GFF3059 0.34 -3.9 493,264 - GFF3059 0.34 +0.2 493,467 + GFF3059 0.56 -1.6 493,467 + GFF3059 0.56 -1.1 493,467 + GFF3059 0.56 -0.8 493,467 + GFF3059 0.56 -0.7 493,468 - GFF3059 0.56 +0.4 493,468 - GFF3059 0.56 +0.4 493,468 - GFF3059 0.56 -0.9 493,893 + -3.7 493,893 + -1.6 493,893 + -1.8 493,893 + +0.6 493,894 - -0.7 493,899 + +0.9 493,899 + -1.6 493,899 + -1.1 493,899 + -4.2 493,899 + -0.1 493,900 - -1.9 493,900 - -0.8 493,900 - -1.1 493,900 - +0.8 493,912 + -2.5 493,913 - -1.1 494,441 + GFF3060 0.49 -3.4 494,441 + GFF3060 0.49 -2.5 494,442 - GFF3060 0.49 +0.2 494,480 + GFF3060 0.53 -1.0 494,522 + GFF3060 0.57 +1.1 494,522 + GFF3060 0.57 -3.8 494,523 - GFF3060 0.57 -1.3 494,591 + GFF3060 0.65 +2.5 494,754 - GFF3060 0.82 -1.6 494,754 - GFF3060 0.82 -0.1 494,807 + GFF3060 0.88 -0.4 494,807 + GFF3060 0.88 -0.3 494,807 + GFF3060 0.88 +2.2 494,808 - GFF3060 0.88 -2.0 494,808 - GFF3060 0.88 -0.9
Or see this region's nucleotide sequence