Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3010 and GFF3011 overlap by 11 nucleotides GFF3011 and GFF3012 are separated by 48 nucleotides GFF3012 and GFF3013 are separated by 49 nucleotides GFF3013 and GFF3014 are separated by 29 nucleotides
GFF3010 - no description, at 437,971 to 438,114
GFF3010
GFF3011 - T6SS component TssB (ImpB/VipA), at 438,104 to 438,679
GFF3011
GFF3012 - T6SS component TssC (ImpC/VipB), at 438,728 to 440,239
GFF3012
GFF3013 - KEGG: type VI secretion system secreted protein Hcp, at 440,289 to 440,771
GFF3013
GFF3014 - KEGG: type VI secretion system protein ImpF, at 440,801 to 441,259
GFF3014
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 437.768 kb on + strand at 437.831 kb on + strand at 437.831 kb on + strand at 437.831 kb on + strand at 437.846 kb on + strand at 437.846 kb on + strand at 437.846 kb on + strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.870 kb on + strand at 437.870 kb on + strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.889 kb on + strand at 437.889 kb on + strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.903 kb on + strand at 437.903 kb on + strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.956 kb on - strand at 437.956 kb on - strand at 437.956 kb on - strand at 437.958 kb on + strand at 437.974 kb on + strand at 437.974 kb on + strand at 437.975 kb on - strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.827 kb on + strand at 438.827 kb on + strand at 438.828 kb on - strand at 438.828 kb on - strand at 438.866 kb on + strand at 438.866 kb on + strand at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.202 kb on + strand, within GFF3012 at 439.202 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.226 kb on + strand, within GFF3012 at 439.226 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.248 kb on - strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.487 kb on + strand, within GFF3012 at 439.487 kb on + strand, within GFF3012 at 439.488 kb on - strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.542 kb on - strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.638 kb on - strand, within GFF3012 at 439.638 kb on - strand, within GFF3012 at 439.638 kb on - strand, within GFF3012 at 439.706 kb on + strand, within GFF3012 at 439.707 kb on - strand, within GFF3012 at 439.707 kb on - strand, within GFF3012 at 439.874 kb on + strand, within GFF3012 at 439.874 kb on + strand, within GFF3012 at 439.874 kb on + strand, within GFF3012 at 439.874 kb on + strand, within GFF3012 at 439.875 kb on - strand, within GFF3012 at 439.875 kb on - strand, within GFF3012 at 439.875 kb on - strand, within GFF3012 at 439.925 kb on + strand, within GFF3012 at 439.925 kb on + strand, within GFF3012 at 439.925 kb on + strand, within GFF3012 at 439.925 kb on + strand, within GFF3012 at 439.925 kb on + strand, within GFF3012 at 439.926 kb on - strand, within GFF3012 at 439.926 kb on - strand, within GFF3012 at 439.926 kb on - strand, within GFF3012 at 439.926 kb on - strand, within GFF3012 at 439.926 kb on - strand, within GFF3012 at 439.955 kb on + strand, within GFF3012 at 439.956 kb on - strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.042 kb on + strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.043 kb on - strand, within GFF3012 at 440.088 kb on - strand at 440.241 kb on - strand at 440.259 kb on + strand at 440.259 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.294 kb on + strand at 440.295 kb on - strand at 440.295 kb on - strand at 440.295 kb on - strand at 440.295 kb on - strand at 440.295 kb on - strand at 440.298 kb on + strand at 440.298 kb on + strand at 440.299 kb on - strand at 440.299 kb on - strand at 440.299 kb on - strand at 440.667 kb on + strand, within GFF3013 at 440.667 kb on + strand, within GFF3013 at 440.667 kb on + strand, within GFF3013 at 440.668 kb on - strand, within GFF3013 at 440.668 kb on - strand, within GFF3013 at 440.668 kb on - strand, within GFF3013 at 440.688 kb on + strand, within GFF3013 at 440.688 kb on + strand, within GFF3013 at 440.689 kb on - strand, within GFF3013 at 440.689 kb on - strand, within GFF3013 at 440.972 kb on + strand, within GFF3014 at 441.002 kb on + strand, within GFF3014 at 441.002 kb on + strand, within GFF3014 at 441.003 kb on - strand, within GFF3014 at 441.093 kb on - strand, within GFF3014
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 437,768 + -2.2 437,831 + -0.4 437,831 + -0.5 437,831 + -2.1 437,846 + +0.5 437,846 + -1.3 437,846 + -2.9 437,847 - -1.0 437,847 - +0.3 437,847 - +1.2 437,847 - -1.2 437,847 - +0.9 437,868 + -2.7 437,868 + -0.5 437,868 + -1.3 437,868 + -1.1 437,868 + -3.2 437,868 + -4.1 437,869 - +1.2 437,869 - -2.2 437,869 - -2.4 437,869 - -0.9 437,869 - -0.6 437,870 + -1.7 437,870 + +0.1 437,871 - +0.0 437,871 - -0.1 437,871 - -0.9 437,871 - -0.7 437,871 - -0.7 437,871 - -0.4 437,889 + -0.7 437,889 + -0.1 437,890 - -0.4 437,890 - +0.1 437,890 - +0.6 437,890 - -2.3 437,890 - +1.0 437,903 + -0.9 437,903 + +0.3 437,955 + -0.5 437,955 + -3.0 437,955 + -2.8 437,956 - -2.6 437,956 - -1.7 437,956 - -0.4 437,958 + +0.8 437,974 + -0.6 437,974 + -1.2 437,975 - +1.4 438,112 + +0.6 438,112 + -0.6 438,112 + -0.3 438,112 + -0.3 438,113 - -0.7 438,113 - -0.1 438,113 - +0.9 438,113 - -2.3 438,113 - -0.5 438,113 - -0.6 438,164 + GFF3011 0.10 +0.1 438,164 + GFF3011 0.10 -2.6 438,164 + GFF3011 0.10 -1.2 438,164 + GFF3011 0.10 -0.1 438,164 + GFF3011 0.10 -0.4 438,164 + GFF3011 0.10 -1.2 438,164 + GFF3011 0.10 -1.5 438,164 + GFF3011 0.10 -0.1 438,164 + GFF3011 0.10 -2.4 438,164 + GFF3011 0.10 +0.8 438,164 + GFF3011 0.10 -1.7 438,164 + GFF3011 0.10 -1.1 438,164 + GFF3011 0.10 +0.5 438,164 + GFF3011 0.10 -0.2 438,164 + GFF3011 0.10 +0.9 438,164 + GFF3011 0.10 +0.5 438,164 + GFF3011 0.10 +1.2 438,164 + GFF3011 0.10 +0.3 438,164 + GFF3011 0.10 -1.3 438,164 + GFF3011 0.10 -2.3 438,164 + GFF3011 0.10 +0.1 438,165 - GFF3011 0.11 -0.3 438,165 - GFF3011 0.11 +4.4 438,165 - GFF3011 0.11 -0.4 438,165 - GFF3011 0.11 -0.4 438,165 - GFF3011 0.11 -0.0 438,165 - GFF3011 0.11 -0.4 438,165 - GFF3011 0.11 -1.8 438,165 - GFF3011 0.11 -1.5 438,165 - GFF3011 0.11 -0.1 438,165 - GFF3011 0.11 -0.1 438,165 - GFF3011 0.11 -1.1 438,165 - GFF3011 0.11 -0.4 438,165 - GFF3011 0.11 -1.6 438,165 - GFF3011 0.11 +1.2 438,165 - GFF3011 0.11 +0.4 438,735 + +0.1 438,735 + +2.0 438,735 + +0.3 438,735 + -0.0 438,735 + +0.3 438,735 + -2.5 438,736 - -1.7 438,736 - +0.4 438,736 - -0.9 438,736 - -0.1 438,736 - +1.2 438,827 + -0.1 438,827 + -0.1 438,828 - +0.5 438,828 - -1.4 438,866 + -1.0 438,866 + +0.3 439,190 + GFF3012 0.31 +0.9 439,190 + GFF3012 0.31 -0.6 439,190 + GFF3012 0.31 -0.3 439,190 + GFF3012 0.31 -1.1 439,190 + GFF3012 0.31 -0.5 439,190 + GFF3012 0.31 -0.1 439,190 + GFF3012 0.31 -0.1 439,191 - GFF3012 0.31 -1.1 439,191 - GFF3012 0.31 -0.3 439,191 - GFF3012 0.31 -0.1 439,191 - GFF3012 0.31 +2.8 439,191 - GFF3012 0.31 -0.4 439,202 + GFF3012 0.31 -1.8 439,202 + GFF3012 0.31 -0.1 439,211 + GFF3012 0.32 -2.1 439,211 + GFF3012 0.32 +0.9 439,211 + GFF3012 0.32 -0.4 439,211 + GFF3012 0.32 +0.3 439,212 - GFF3012 0.32 -0.6 439,212 - GFF3012 0.32 -0.6 439,212 - GFF3012 0.32 +1.5 439,226 + GFF3012 0.33 -2.3 439,226 + GFF3012 0.33 +1.5 439,247 + GFF3012 0.34 -0.3 439,247 + GFF3012 0.34 -1.7 439,247 + GFF3012 0.34 -0.6 439,247 + GFF3012 0.34 -2.7 439,247 + GFF3012 0.34 +0.1 439,248 - GFF3012 0.34 +0.1 439,250 + GFF3012 0.35 -0.4 439,250 + GFF3012 0.35 -3.6 439,250 + GFF3012 0.35 -0.5 439,250 + GFF3012 0.35 -2.3 439,251 - GFF3012 0.35 -0.3 439,251 - GFF3012 0.35 -1.7 439,251 - GFF3012 0.35 -2.6 439,251 - GFF3012 0.35 -2.3 439,251 - GFF3012 0.35 -0.3 439,251 - GFF3012 0.35 +0.9 439,251 - GFF3012 0.35 -1.7 439,251 - GFF3012 0.35 -0.4 439,463 + GFF3012 0.49 -0.6 439,463 + GFF3012 0.49 -0.5 439,463 + GFF3012 0.49 -0.7 439,463 + GFF3012 0.49 +1.2 439,487 + GFF3012 0.50 +0.8 439,487 + GFF3012 0.50 -0.1 439,488 - GFF3012 0.50 +1.4 439,541 + GFF3012 0.54 +0.6 439,541 + GFF3012 0.54 -1.6 439,541 + GFF3012 0.54 -0.9 439,542 - GFF3012 0.54 +1.1 439,577 + GFF3012 0.56 -1.6 439,577 + GFF3012 0.56 -1.3 439,577 + GFF3012 0.56 +0.9 439,577 + GFF3012 0.56 +0.4 439,578 - GFF3012 0.56 -0.9 439,578 - GFF3012 0.56 -2.4 439,578 - GFF3012 0.56 +0.1 439,637 + GFF3012 0.60 +0.0 439,637 + GFF3012 0.60 +0.2 439,637 + GFF3012 0.60 -1.1 439,637 + GFF3012 0.60 +0.1 439,637 + GFF3012 0.60 -2.6 439,637 + GFF3012 0.60 -0.2 439,637 + GFF3012 0.60 -1.6 439,638 - GFF3012 0.60 -1.4 439,638 - GFF3012 0.60 -0.8 439,638 - GFF3012 0.60 -0.7 439,706 + GFF3012 0.65 +1.0 439,707 - GFF3012 0.65 -1.2 439,707 - GFF3012 0.65 -3.3 439,874 + GFF3012 0.76 -3.2 439,874 + GFF3012 0.76 +0.2 439,874 + GFF3012 0.76 -0.1 439,874 + GFF3012 0.76 +2.2 439,875 - GFF3012 0.76 -2.1 439,875 - GFF3012 0.76 -3.0 439,875 - GFF3012 0.76 -1.6 439,925 + GFF3012 0.79 +1.0 439,925 + GFF3012 0.79 -0.1 439,925 + GFF3012 0.79 -1.9 439,925 + GFF3012 0.79 -0.5 439,925 + GFF3012 0.79 -2.5 439,926 - GFF3012 0.79 -1.9 439,926 - GFF3012 0.79 -2.9 439,926 - GFF3012 0.79 +0.3 439,926 - GFF3012 0.79 -1.0 439,926 - GFF3012 0.79 +0.5 439,955 + GFF3012 0.81 -0.4 439,956 - GFF3012 0.81 +0.9 440,042 + GFF3012 0.87 -1.4 440,042 + GFF3012 0.87 +1.9 440,042 + GFF3012 0.87 -1.0 440,042 + GFF3012 0.87 -0.3 440,042 + GFF3012 0.87 +0.3 440,042 + GFF3012 0.87 -1.7 440,042 + GFF3012 0.87 +0.7 440,042 + GFF3012 0.87 -3.7 440,042 + GFF3012 0.87 +0.4 440,042 + GFF3012 0.87 -0.9 440,043 - GFF3012 0.87 +0.9 440,043 - GFF3012 0.87 -0.7 440,043 - GFF3012 0.87 -0.7 440,043 - GFF3012 0.87 +0.4 440,043 - GFF3012 0.87 -1.6 440,043 - GFF3012 0.87 -0.1 440,088 - -0.6 440,241 - +1.3 440,259 + -3.3 440,259 + -0.3 440,294 + -0.5 440,294 + -0.9 440,294 + -2.0 440,294 + +1.3 440,294 + +0.0 440,294 + +0.3 440,294 + -1.0 440,294 + -2.3 440,294 + -2.3 440,294 + -1.9 440,295 - -0.4 440,295 - +0.9 440,295 - -0.9 440,295 - -0.4 440,295 - -2.3 440,298 + -0.3 440,298 + -0.9 440,299 - -1.6 440,299 - -1.3 440,299 - -0.3 440,667 + GFF3013 0.78 +2.5 440,667 + GFF3013 0.78 +1.5 440,667 + GFF3013 0.78 -0.9 440,668 - GFF3013 0.78 -1.8 440,668 - GFF3013 0.78 +0.1 440,668 - GFF3013 0.78 +3.4 440,688 + GFF3013 0.83 -0.1 440,688 + GFF3013 0.83 +0.7 440,689 - GFF3013 0.83 +0.2 440,689 - GFF3013 0.83 -2.9 440,972 + GFF3014 0.37 -0.9 441,002 + GFF3014 0.44 +1.1 441,002 + GFF3014 0.44 -0.8 441,003 - GFF3014 0.44 +2.2 441,093 - GFF3014 0.64 -2.3
Or see this region's nucleotide sequence