Strain Fitness in Variovorax sp. SCN45 around GFF2959

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2958 and GFF2959 overlap by 4 nucleotidesGFF2959 and GFF2960 are separated by 64 nucleotidesGFF2960 and GFF2961 are separated by 103 nucleotides GFF2958 - hypothetical protein, at 385,847 to 387,583 GFF2958 GFF2959 - Uncharacterized protein YfaP, at 387,580 to 388,395 GFF2959 GFF2960 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 388,460 to 389,023 GFF2960 GFF2961 - CzcABC family efflux RND transporter, transmembrane protein, at 389,127 to 392,348 GFF2961 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 386.721 kb on - strand, within GFF2958at 386.861 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.497 kb on + strandat 387.497 kb on + strandat 387.497 kb on + strandat 387.497 kb on + strandat 387.498 kb on - strandat 387.498 kb on - strandat 387.624 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.640 kb on - strandat 387.640 kb on - strandat 388.006 kb on + strand, within GFF2959at 388.006 kb on + strand, within GFF2959at 388.006 kb on + strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.241 kb on - strand, within GFF2959at 388.676 kb on + strand, within GFF2960at 388.677 kb on - strand, within GFF2960at 388.677 kb on - strand, within GFF2960at 388.677 kb on - strand, within GFF2960at 388.677 kb on - strand, within GFF2960at 388.749 kb on - strand, within GFF2960at 388.749 kb on - strand, within GFF2960at 388.907 kb on + strand, within GFF2960at 388.908 kb on - strand, within GFF2960at 388.908 kb on - strand, within GFF2960at 388.908 kb on - strand, within GFF2960at 388.908 kb on - strand, within GFF2960at 389.021 kb on + strandat 389.021 kb on + strandat 389.022 kb on - strandat 389.022 kb on - strandat 389.022 kb on - strandat 389.022 kb on - strandat 389.022 kb on - strandat 389.033 kb on - strandat 389.033 kb on - strandat 389.069 kb on + strandat 389.069 kb on + strandat 389.069 kb on + strandat 389.069 kb on + strandat 389.069 kb on + strandat 389.070 kb on - strandat 389.070 kb on - strandat 389.070 kb on - strandat 389.070 kb on - strandat 389.075 kb on + strandat 389.076 kb on - strandat 389.083 kb on + strandat 389.083 kb on + strandat 389.083 kb on + strandat 389.083 kb on + strandat 389.083 kb on + strandat 389.084 kb on - strandat 389.084 kb on - strandat 389.084 kb on - strandat 389.084 kb on - strandat 389.084 kb on - strandat 389.084 kb on - strandat 389.154 kb on + strandat 389.154 kb on + strandat 389.154 kb on + strandat 389.154 kb on + strandat 389.154 kb on + strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.155 kb on - strandat 389.271 kb on + strandat 389.271 kb on + strandat 389.271 kb on + strandat 389.271 kb on + strandat 389.272 kb on - strandat 389.272 kb on - strandat 389.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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386,721 - GFF2958 0.50 -2.2
386,861 + GFF2958 0.58 -2.2
386,909 + GFF2958 0.61 -0.1
386,909 + GFF2958 0.61 +0.4
386,909 + GFF2958 0.61 -1.7
386,909 + GFF2958 0.61 -0.2
386,910 - GFF2958 0.61 +1.9
386,910 - GFF2958 0.61 +1.6
386,910 - GFF2958 0.61 -0.4
386,910 - GFF2958 0.61 -0.0
386,910 - GFF2958 0.61 +0.3
386,990 + GFF2958 0.66 -0.3
386,990 + GFF2958 0.66 +0.3
386,990 + GFF2958 0.66 -0.1
386,991 - GFF2958 0.66 -1.0
386,991 - GFF2958 0.66 +1.3
386,991 - GFF2958 0.66 +0.9
386,991 - GFF2958 0.66 +0.7
386,991 - GFF2958 0.66 -2.0
386,991 - GFF2958 0.66 +2.1
386,991 - GFF2958 0.66 -3.2
386,991 - GFF2958 0.66 +0.5
387,144 - GFF2958 0.75 -0.1
387,144 - GFF2958 0.75 -3.1
387,144 - GFF2958 0.75 -0.4
387,144 - GFF2958 0.75 +0.9
387,497 + +0.2
387,497 + -1.9
387,497 + -0.4
387,497 + -1.3
387,498 - -0.4
387,498 - +2.4
387,624 + -0.9
387,639 + -2.0
387,639 + -3.7
387,639 + +1.5
387,639 + +0.1
387,639 + +0.3
387,640 - +0.5
387,640 - -0.2
388,006 + GFF2959 0.52 -1.4
388,006 + GFF2959 0.52 -1.1
388,006 + GFF2959 0.52 -1.3
388,007 - GFF2959 0.52 -2.0
388,007 - GFF2959 0.52 -1.5
388,007 - GFF2959 0.52 +2.7
388,007 - GFF2959 0.52 -0.8
388,120 + GFF2959 0.66 -1.9
388,120 + GFF2959 0.66 -0.5
388,120 + GFF2959 0.66 +0.4
388,222 + GFF2959 0.79 -2.3
388,222 + GFF2959 0.79 -1.5
388,222 + GFF2959 0.79 -0.8
388,222 + GFF2959 0.79 -2.2
388,222 + GFF2959 0.79 -0.8
388,222 + GFF2959 0.79 +0.9
388,240 + GFF2959 0.81 -1.3
388,240 + GFF2959 0.81 +1.1
388,240 + GFF2959 0.81 +0.0
388,240 + GFF2959 0.81 +0.1
388,241 - GFF2959 0.81 -1.5
388,676 + GFF2960 0.38 -2.4
388,677 - GFF2960 0.38 -2.3
388,677 - GFF2960 0.38 +0.5
388,677 - GFF2960 0.38 +1.2
388,677 - GFF2960 0.38 -3.0
388,749 - GFF2960 0.51 +3.8
388,749 - GFF2960 0.51 -1.5
388,907 + GFF2960 0.79 -2.5
388,908 - GFF2960 0.79 -3.2
388,908 - GFF2960 0.79 +0.3
388,908 - GFF2960 0.79 -1.5
388,908 - GFF2960 0.79 -0.2
389,021 + -1.4
389,021 + -3.2
389,022 - -0.1
389,022 - -0.4
389,022 - -0.8
389,022 - -1.1
389,022 - -1.5
389,033 - +1.9
389,033 - -0.3
389,069 + +0.4
389,069 + -1.1
389,069 + -1.5
389,069 + -0.2
389,069 + +0.5
389,070 - -0.7
389,070 - -0.9
389,070 - +1.3
389,070 - +0.8
389,075 + +4.6
389,076 - -1.8
389,083 + -0.7
389,083 + +1.2
389,083 + +0.4
389,083 + -1.7
389,083 + +0.3
389,084 - -0.2
389,084 - +0.1
389,084 - +1.9
389,084 - -0.5
389,084 - +0.5
389,084 - +0.3
389,154 + +1.0
389,154 + +0.3
389,154 + +0.0
389,154 + -2.1
389,154 + +0.0
389,155 - -1.1
389,155 - -1.0
389,155 - -0.5
389,155 - +0.0
389,155 - -1.8
389,155 - +1.6
389,155 - +0.8
389,155 - +0.3
389,271 + -3.6
389,271 + +0.3
389,271 + -1.4
389,271 + -2.8
389,272 - -0.9
389,272 - -0.1
389,272 - +0.1

Or see this region's nucleotide sequence