Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2910 and GFF2911 are separated by 111 nucleotides GFF2911 and GFF2912 are separated by 99 nucleotides GFF2912 and GFF2913 overlap by 4 nucleotides
GFF2910 - BUG/TctC family periplasmic protein, at 337,899 to 338,897
GFF2910
GFF2911 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 339,009 to 339,893
GFF2911
GFF2912 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 339,993 to 340,742
GFF2912
GFF2913 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 340,739 to 341,395
GFF2913
Position (kb) 339
340 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 338.242 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.555 kb on - strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.606 kb on - strand, within GFF2910 at 338.606 kb on - strand, within GFF2910 at 339.193 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.453 kb on - strand, within GFF2911 at 339.676 kb on + strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.872 kb on + strand at 339.905 kb on + strand at 339.906 kb on - strand at 339.918 kb on - strand at 339.999 kb on + strand at 339.999 kb on + strand at 339.999 kb on + strand at 339.999 kb on + strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.029 kb on + strand at 340.029 kb on + strand at 340.029 kb on + strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.170 kb on + strand, within GFF2912 at 340.170 kb on + strand, within GFF2912 at 340.170 kb on + strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.302 kb on + strand, within GFF2912 at 340.434 kb on + strand, within GFF2912 at 340.434 kb on + strand, within GFF2912 at 340.435 kb on - strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.564 kb on - strand, within GFF2912 at 340.564 kb on - strand, within GFF2912 at 340.584 kb on + strand, within GFF2912 at 340.585 kb on - strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.775 kb on + strand at 340.775 kb on + strand at 340.775 kb on + strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 338,242 + GFF2910 0.34 +1.6 338,320 + GFF2910 0.42 +0.5 338,320 + GFF2910 0.42 -0.6 338,321 - GFF2910 0.42 -0.3 338,321 - GFF2910 0.42 +0.3 338,329 + GFF2910 0.43 -1.5 338,329 + GFF2910 0.43 +0.9 338,329 + GFF2910 0.43 -0.2 338,329 + GFF2910 0.43 -0.1 338,330 - GFF2910 0.43 -0.1 338,330 - GFF2910 0.43 -4.1 338,330 - GFF2910 0.43 +0.6 338,330 - GFF2910 0.43 -0.3 338,497 + GFF2910 0.60 -1.2 338,497 + GFF2910 0.60 +1.5 338,497 + GFF2910 0.60 +0.3 338,555 - GFF2910 0.66 -2.1 338,605 + GFF2910 0.71 -1.1 338,605 + GFF2910 0.71 +0.4 338,605 + GFF2910 0.71 +1.6 338,606 - GFF2910 0.71 -0.3 338,606 - GFF2910 0.71 +1.4 339,193 + GFF2911 0.21 +2.7 339,229 + GFF2911 0.25 -0.2 339,229 + GFF2911 0.25 -0.4 339,230 - GFF2911 0.25 -2.6 339,230 - GFF2911 0.25 -0.7 339,323 - GFF2911 0.35 +0.5 339,323 - GFF2911 0.35 -3.0 339,453 - GFF2911 0.50 -1.7 339,676 + GFF2911 0.75 -0.9 339,677 - GFF2911 0.75 +0.2 339,677 - GFF2911 0.75 -1.8 339,677 - GFF2911 0.75 -1.2 339,872 + -1.4 339,905 + +0.0 339,906 - -0.2 339,918 - +0.9 339,999 + -1.3 339,999 + -0.7 339,999 + -0.4 339,999 + -1.2 340,000 - -0.9 340,000 - -3.0 340,000 - +1.9 340,000 - -2.2 340,000 - -0.1 340,000 - +2.1 340,029 + -2.3 340,029 + +1.3 340,029 + -0.0 340,030 - -1.2 340,030 - -0.1 340,030 - -1.1 340,030 - +0.3 340,030 - -1.4 340,030 - +0.6 340,030 - -1.4 340,170 + GFF2912 0.24 -3.2 340,170 + GFF2912 0.24 -3.1 340,170 + GFF2912 0.24 +0.6 340,171 - GFF2912 0.24 -2.0 340,171 - GFF2912 0.24 +0.1 340,171 - GFF2912 0.24 -1.0 340,171 - GFF2912 0.24 -0.9 340,171 - GFF2912 0.24 +0.3 340,171 - GFF2912 0.24 -2.2 340,171 - GFF2912 0.24 +0.6 340,222 - GFF2912 0.31 -2.0 340,222 - GFF2912 0.31 -3.1 340,222 - GFF2912 0.31 +0.3 340,302 + GFF2912 0.41 -1.7 340,434 + GFF2912 0.59 -4.0 340,434 + GFF2912 0.59 -0.3 340,435 - GFF2912 0.59 -0.9 340,563 + GFF2912 0.76 +1.9 340,563 + GFF2912 0.76 +1.3 340,563 + GFF2912 0.76 -0.0 340,563 + GFF2912 0.76 -2.4 340,563 + GFF2912 0.76 -3.0 340,563 + GFF2912 0.76 -2.1 340,564 - GFF2912 0.76 +0.6 340,564 - GFF2912 0.76 +0.0 340,584 + GFF2912 0.79 -0.0 340,585 - GFF2912 0.79 -1.1 340,635 + GFF2912 0.86 -3.5 340,635 + GFF2912 0.86 +0.1 340,635 + GFF2912 0.86 -0.1 340,635 + GFF2912 0.86 +0.3 340,635 + GFF2912 0.86 -0.1 340,775 + +1.7 340,775 + +2.6 340,775 + +1.6 340,776 - +0.9 340,776 - +0.6 340,776 - -0.7 340,776 - -2.0 340,776 - -1.2
Or see this region's nucleotide sequence