Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2898 and GFF2899 are separated by 34 nucleotides GFF2899 and GFF2900 are separated by 162 nucleotides GFF2900 and GFF2901 overlap by 20 nucleotides
GFF2898 - Cardiolipin synthase, bacterial type ClsA, at 323,763 to 325,145
GFF2898
GFF2899 - no description, at 325,180 to 325,323
GFF2899
GFF2900 - Subtilisin-like serine proteases, at 325,486 to 327,108
GFF2900
GFF2901 - FIG00347713: hypothetical protein, at 327,089 to 328,222
GFF2901
Position (kb) 325
326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 324.724 kb on - strand, within GFF2898 at 325.006 kb on - strand, within GFF2898 at 325.006 kb on - strand, within GFF2898 at 325.143 kb on + strand at 325.143 kb on + strand at 325.143 kb on + strand at 325.143 kb on + strand at 325.144 kb on - strand at 325.157 kb on + strand at 325.157 kb on + strand at 325.195 kb on + strand, within GFF2899 at 325.200 kb on + strand, within GFF2899 at 325.201 kb on - strand, within GFF2899 at 325.201 kb on - strand, within GFF2899 at 325.217 kb on - strand, within GFF2899 at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.708 kb on + strand, within GFF2900 at 325.708 kb on + strand, within GFF2900 at 325.708 kb on + strand, within GFF2900 at 325.708 kb on + strand, within GFF2900 at 325.708 kb on + strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.709 kb on - strand, within GFF2900 at 325.766 kb on - strand, within GFF2900 at 325.906 kb on + strand, within GFF2900 at 325.907 kb on - strand, within GFF2900 at 325.907 kb on - strand, within GFF2900 at 325.975 kb on + strand, within GFF2900 at 325.975 kb on + strand, within GFF2900 at 325.976 kb on - strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.978 kb on + strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 325.979 kb on - strand, within GFF2900 at 326.490 kb on + strand, within GFF2900 at 326.491 kb on - strand, within GFF2900 at 326.491 kb on - strand, within GFF2900 at 326.491 kb on - strand, within GFF2900 at 326.491 kb on - strand, within GFF2900 at 326.728 kb on + strand, within GFF2900 at 326.728 kb on + strand, within GFF2900 at 326.728 kb on + strand, within GFF2900 at 326.728 kb on + strand, within GFF2900 at 326.729 kb on - strand, within GFF2900 at 326.729 kb on - strand, within GFF2900 at 326.729 kb on - strand, within GFF2900 at 326.996 kb on - strand at 326.996 kb on - strand at 327.029 kb on - strand at 327.454 kb on - strand, within GFF2901 at 327.649 kb on - strand, within GFF2901 at 327.649 kb on - strand, within GFF2901
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 324,724 - GFF2898 0.69 +0.7 325,006 - GFF2898 0.90 -0.3 325,006 - GFF2898 0.90 -1.4 325,143 + -1.7 325,143 + +0.8 325,143 + -1.0 325,143 + -0.9 325,144 - -0.9 325,157 + -0.1 325,157 + -0.1 325,195 + GFF2899 0.10 +0.6 325,200 + GFF2899 0.14 +0.4 325,201 - GFF2899 0.15 -0.3 325,201 - GFF2899 0.15 -2.0 325,217 - GFF2899 0.26 +2.6 325,597 + -1.1 325,597 + -0.4 325,597 + -0.9 325,598 - +2.5 325,598 - +1.4 325,598 - +1.2 325,708 + GFF2900 0.14 -0.6 325,708 + GFF2900 0.14 -0.9 325,708 + GFF2900 0.14 +0.5 325,708 + GFF2900 0.14 -2.6 325,708 + GFF2900 0.14 -0.9 325,709 - GFF2900 0.14 +1.9 325,709 - GFF2900 0.14 +0.2 325,709 - GFF2900 0.14 -1.1 325,709 - GFF2900 0.14 -0.7 325,709 - GFF2900 0.14 -2.4 325,709 - GFF2900 0.14 -0.4 325,766 - GFF2900 0.17 +0.8 325,906 + GFF2900 0.26 +1.8 325,907 - GFF2900 0.26 -1.1 325,907 - GFF2900 0.26 +2.6 325,975 + GFF2900 0.30 -0.1 325,975 + GFF2900 0.30 -1.9 325,976 - GFF2900 0.30 -1.2 325,978 + GFF2900 0.30 +0.6 325,978 + GFF2900 0.30 -2.4 325,978 + GFF2900 0.30 +0.1 325,978 + GFF2900 0.30 +0.3 325,978 + GFF2900 0.30 +1.5 325,978 + GFF2900 0.30 -3.5 325,979 - GFF2900 0.30 -0.4 325,979 - GFF2900 0.30 -0.1 325,979 - GFF2900 0.30 -0.4 325,979 - GFF2900 0.30 -1.4 325,979 - GFF2900 0.30 -0.2 325,979 - GFF2900 0.30 +1.1 325,979 - GFF2900 0.30 +0.6 325,979 - GFF2900 0.30 -1.9 325,979 - GFF2900 0.30 +0.9 325,979 - GFF2900 0.30 -0.7 325,979 - GFF2900 0.30 -0.5 325,979 - GFF2900 0.30 -0.3 325,979 - GFF2900 0.30 -1.3 325,979 - GFF2900 0.30 -0.4 325,979 - GFF2900 0.30 +2.8 326,490 + GFF2900 0.62 -0.3 326,491 - GFF2900 0.62 -1.3 326,491 - GFF2900 0.62 +0.3 326,491 - GFF2900 0.62 -1.3 326,491 - GFF2900 0.62 -0.6 326,728 + GFF2900 0.77 -0.9 326,728 + GFF2900 0.77 +0.6 326,728 + GFF2900 0.77 -0.9 326,728 + GFF2900 0.77 +1.9 326,729 - GFF2900 0.77 -1.3 326,729 - GFF2900 0.77 -0.9 326,729 - GFF2900 0.77 +1.8 326,996 - -2.7 326,996 - -1.7 327,029 - +0.3 327,454 - GFF2901 0.32 -0.3 327,649 - GFF2901 0.49 -1.7 327,649 - GFF2901 0.49 +0.2
Or see this region's nucleotide sequence