Strain Fitness in Variovorax sp. SCN45 around GFF2899

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2898 and GFF2899 are separated by 34 nucleotidesGFF2899 and GFF2900 are separated by 162 nucleotides GFF2898 - Cardiolipin synthase, bacterial type ClsA, at 323,763 to 325,145 GFF2898 GFF2899 - no description, at 325,180 to 325,323 GFF2899 GFF2900 - Subtilisin-like serine proteases, at 325,486 to 327,108 GFF2900 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.724 kb on - strand, within GFF2898at 325.006 kb on - strand, within GFF2898at 325.006 kb on - strand, within GFF2898at 325.143 kb on + strandat 325.143 kb on + strandat 325.143 kb on + strandat 325.143 kb on + strandat 325.144 kb on - strandat 325.157 kb on + strandat 325.157 kb on + strandat 325.195 kb on + strand, within GFF2899at 325.200 kb on + strand, within GFF2899at 325.201 kb on - strand, within GFF2899at 325.201 kb on - strand, within GFF2899at 325.217 kb on - strand, within GFF2899at 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.766 kb on - strand, within GFF2900at 325.906 kb on + strand, within GFF2900at 325.907 kb on - strand, within GFF2900at 325.907 kb on - strand, within GFF2900at 325.975 kb on + strand, within GFF2900at 325.975 kb on + strand, within GFF2900at 325.976 kb on - strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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324,441 + GFF2898 0.49 -1.7
324,441 + GFF2898 0.49 -1.5
324,441 + GFF2898 0.49 +0.5
324,724 - GFF2898 0.69 +0.7
325,006 - GFF2898 0.90 -0.3
325,006 - GFF2898 0.90 -1.4
325,143 + -1.7
325,143 + +0.8
325,143 + -1.0
325,143 + -0.9
325,144 - -0.9
325,157 + -0.1
325,157 + -0.1
325,195 + GFF2899 0.10 +0.6
325,200 + GFF2899 0.14 +0.4
325,201 - GFF2899 0.15 -0.3
325,201 - GFF2899 0.15 -2.0
325,217 - GFF2899 0.26 +2.6
325,597 + -1.1
325,597 + -0.4
325,597 + -0.9
325,598 - +2.5
325,598 - +1.4
325,598 - +1.2
325,708 + GFF2900 0.14 -0.6
325,708 + GFF2900 0.14 -0.9
325,708 + GFF2900 0.14 +0.5
325,708 + GFF2900 0.14 -2.6
325,708 + GFF2900 0.14 -0.9
325,709 - GFF2900 0.14 +1.9
325,709 - GFF2900 0.14 +0.2
325,709 - GFF2900 0.14 -1.1
325,709 - GFF2900 0.14 -0.7
325,709 - GFF2900 0.14 -2.4
325,709 - GFF2900 0.14 -0.4
325,766 - GFF2900 0.17 +0.8
325,906 + GFF2900 0.26 +1.8
325,907 - GFF2900 0.26 -1.1
325,907 - GFF2900 0.26 +2.6
325,975 + GFF2900 0.30 -0.1
325,975 + GFF2900 0.30 -1.9
325,976 - GFF2900 0.30 -1.2
325,978 + GFF2900 0.30 +0.6
325,978 + GFF2900 0.30 -2.4
325,978 + GFF2900 0.30 +0.1
325,978 + GFF2900 0.30 +0.3
325,978 + GFF2900 0.30 +1.5
325,978 + GFF2900 0.30 -3.5
325,979 - GFF2900 0.30 -0.4
325,979 - GFF2900 0.30 -0.1
325,979 - GFF2900 0.30 -0.4
325,979 - GFF2900 0.30 -1.4
325,979 - GFF2900 0.30 -0.2
325,979 - GFF2900 0.30 +1.1
325,979 - GFF2900 0.30 +0.6
325,979 - GFF2900 0.30 -1.9
325,979 - GFF2900 0.30 +0.9
325,979 - GFF2900 0.30 -0.7
325,979 - GFF2900 0.30 -0.5
325,979 - GFF2900 0.30 -0.3
325,979 - GFF2900 0.30 -1.3
325,979 - GFF2900 0.30 -0.4
325,979 - GFF2900 0.30 +2.8

Or see this region's nucleotide sequence