Strain Fitness in Variovorax sp. SCN45 around GFF2888

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2886 and GFF2887 overlap by 4 nucleotidesGFF2887 and GFF2888 are separated by 7 nucleotidesGFF2888 and GFF2889 overlap by 8 nucleotidesGFF2889 and GFF2890 overlap by 4 nucleotides GFF2886 - Metallo-beta-lactamase superfamily protein PA0057, at 312,398 to 313,297 GFF2886 GFF2887 - Thioredoxin-like protein clustered with PA0057, at 313,294 to 314,025 GFF2887 GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737 GFF2888 GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491 GFF2889 GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486 GFF2890 Position (kb) 314 315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 313.082 kb on + strand, within GFF2886at 313.082 kb on + strand, within GFF2886at 313.083 kb on - strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.146 kb on - strand, within GFF2886at 313.146 kb on - strand, within GFF2886at 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.480 kb on + strand, within GFF2887at 313.481 kb on - strand, within GFF2887at 313.481 kb on - strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.673 kb on - strand, within GFF2887at 313.799 kb on + strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.998 kb on - strandat 313.998 kb on - strandat 314.394 kb on + strand, within GFF2888at 314.394 kb on + strand, within GFF2888at 314.394 kb on + strand, within GFF2888at 314.395 kb on - strand, within GFF2888at 314.395 kb on - strand, within GFF2888at 314.718 kb on - strandat 314.718 kb on - strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 315.041 kb on - strand, within GFF2889at 315.603 kb on + strand, within GFF2890at 315.603 kb on + strand, within GFF2890at 315.604 kb on - strand, within GFF2890at 315.673 kb on - strand, within GFF2890

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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313,082 + GFF2886 0.76 -1.1
313,082 + GFF2886 0.76 +1.9
313,083 - GFF2886 0.76 -0.8
313,112 + GFF2886 0.79 +2.7
313,112 + GFF2886 0.79 +1.1
313,112 + GFF2886 0.79 -3.2
313,112 + GFF2886 0.79 -0.6
313,112 + GFF2886 0.79 -0.5
313,146 - GFF2886 0.83 -2.4
313,146 - GFF2886 0.83 -0.9
313,330 + +1.1
313,330 + -3.4
313,330 + -1.5
313,330 + -2.3
313,330 + -1.7
313,330 + -1.1
313,330 + -1.7
313,330 + +0.3
313,330 + -1.3
313,330 + +2.4
313,330 + -0.1
313,330 + -2.1
313,330 + -1.5
313,331 - +1.2
313,331 - +1.1
313,331 - -1.7
313,331 - -0.3
313,331 - -2.0
313,331 - -0.1
313,331 - -2.9
313,331 - -2.0
313,331 - +1.9
313,331 - -1.5
313,331 - -3.4
313,331 - +0.4
313,331 - -0.9
313,331 - -2.8
313,331 - +2.4
313,331 - +0.3
313,331 - +0.3
313,360 + -1.7
313,360 + +0.9
313,360 + -3.9
313,360 + -0.5
313,360 + +1.3
313,361 - -2.2
313,361 - +0.8
313,361 - -1.2
313,361 - -0.8
313,361 - -1.4
313,480 + GFF2887 0.25 -2.7
313,481 - GFF2887 0.26 +0.1
313,481 - GFF2887 0.26 -2.2
313,540 + GFF2887 0.34 -1.0
313,540 + GFF2887 0.34 -0.8
313,540 + GFF2887 0.34 -2.7
313,541 - GFF2887 0.34 +0.8
313,541 - GFF2887 0.34 +0.2
313,541 - GFF2887 0.34 -0.1
313,541 - GFF2887 0.34 -0.4
313,541 - GFF2887 0.34 -0.7
313,672 + GFF2887 0.52 +0.9
313,672 + GFF2887 0.52 +0.2
313,672 + GFF2887 0.52 +2.6
313,672 + GFF2887 0.52 +1.2
313,673 - GFF2887 0.52 +0.9
313,799 + GFF2887 0.69 -2.8
313,800 - GFF2887 0.69 +0.4
313,800 - GFF2887 0.69 +2.3
313,800 - GFF2887 0.69 -1.5
313,800 - GFF2887 0.69 +0.1
313,998 - +0.4
313,998 - +1.1
314,394 + GFF2888 0.51 +2.2
314,394 + GFF2888 0.51 -1.8
314,394 + GFF2888 0.51 +0.2
314,395 - GFF2888 0.51 -2.7
314,395 - GFF2888 0.51 -0.2
314,718 - -1.8
314,718 - +1.0
314,761 + -0.9
314,761 + -2.1
314,761 + +0.1
314,761 + -1.4
314,761 + +0.5
314,761 + +1.9
314,762 - +0.4
314,762 - -1.0
314,762 - -2.5
314,762 - -1.2
314,762 - +2.9
314,762 - -1.8
314,762 - -2.1
314,762 - -1.9
315,041 - GFF2889 0.41 -1.5
315,603 + GFF2890 0.12 +0.0
315,603 + GFF2890 0.12 +0.8
315,604 - GFF2890 0.12 -2.0
315,673 - GFF2890 0.19 -0.7

Or see this region's nucleotide sequence