Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2836 and GFF2837 are separated by 5 nucleotides GFF2837 and GFF2838 are separated by 94 nucleotides GFF2838 and GFF2839 are separated by 183 nucleotides GFF2839 and GFF2840 are separated by 193 nucleotides
GFF2836 - MotA/TolQ/ExbB proton channel family protein, at 262,643 to 263,356
GFF2836
GFF2837 - Biopolymer transport protein ExbD/TolR, at 263,362 to 263,775
GFF2837
GFF2838 - hypothetical protein, at 263,870 to 264,082
GFF2838
GFF2839 - Protein GlcG, at 264,266 to 264,673
GFF2839
GFF2840 - Integral membrane protein, interacts with FtsH, at 264,867 to 265,568
GFF2840
Position (kb) 263
264
265 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.090 kb on + strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.091 kb on - strand, within GFF2836 at 263.216 kb on + strand, within GFF2836 at 263.216 kb on + strand, within GFF2836 at 263.216 kb on + strand, within GFF2836 at 263.288 kb on + strand at 263.288 kb on + strand at 263.288 kb on + strand at 263.289 kb on - strand at 263.289 kb on - strand at 263.575 kb on + strand, within GFF2837 at 263.576 kb on - strand, within GFF2837 at 263.578 kb on + strand, within GFF2837 at 263.578 kb on + strand, within GFF2837 at 263.767 kb on - strand at 263.856 kb on + strand at 264.036 kb on - strand, within GFF2838 at 264.036 kb on - strand, within GFF2838 at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.080 kb on + strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.081 kb on - strand at 264.179 kb on + strand at 264.180 kb on - strand at 264.180 kb on - strand at 264.424 kb on + strand, within GFF2839 at 264.425 kb on - strand, within GFF2839 at 264.425 kb on - strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.450 kb on + strand, within GFF2839 at 264.451 kb on - strand, within GFF2839 at 264.451 kb on - strand, within GFF2839 at 264.451 kb on - strand, within GFF2839 at 264.451 kb on - strand, within GFF2839 at 264.583 kb on + strand, within GFF2839 at 264.584 kb on - strand, within GFF2839 at 264.692 kb on + strand at 264.693 kb on - strand at 264.693 kb on - strand at 264.751 kb on + strand at 264.751 kb on + strand at 264.751 kb on + strand at 264.751 kb on + strand at 264.751 kb on + strand at 264.751 kb on + strand at 264.752 kb on - strand at 264.752 kb on - strand at 264.752 kb on - strand at 264.752 kb on - strand at 264.752 kb on - strand at 264.752 kb on - strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.767 kb on + strand at 264.768 kb on - strand at 264.768 kb on - strand at 264.768 kb on - strand at 264.768 kb on - strand at 264.768 kb on - strand at 264.768 kb on - strand at 264.783 kb on + strand at 264.783 kb on + strand at 264.783 kb on + strand at 264.783 kb on + strand at 264.783 kb on + strand at 264.783 kb on + strand at 264.784 kb on - strand at 264.784 kb on - strand at 264.784 kb on - strand at 264.784 kb on - strand at 264.784 kb on - strand at 264.818 kb on + strand at 264.818 kb on + strand at 264.818 kb on + strand at 264.819 kb on - strand at 264.819 kb on - strand at 264.819 kb on - strand at 264.841 kb on + strand at 264.841 kb on + strand at 264.841 kb on + strand at 264.841 kb on + strand at 264.841 kb on + strand at 264.841 kb on + strand at 264.842 kb on - strand at 264.842 kb on - strand at 264.842 kb on - strand at 264.882 kb on - strand at 264.889 kb on + strand at 264.889 kb on + strand at 264.889 kb on + strand at 264.889 kb on + strand at 264.889 kb on + strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.890 kb on - strand at 264.906 kb on + strand at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.957 kb on + strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840 at 264.958 kb on - strand, within GFF2840
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,090 + GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +0.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +0.3 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +1.9 263,091 - GFF2836 0.63 +0.9 263,216 + GFF2836 0.80 +1.9 263,216 + GFF2836 0.80 +1.9 263,216 + GFF2836 0.80 +1.9 263,288 + +1.9 263,288 + +1.9 263,288 + +1.9 263,289 - +1.9 263,289 - +1.9 263,575 + GFF2837 0.51 +1.9 263,576 - GFF2837 0.52 +0.3 263,578 + GFF2837 0.52 +1.9 263,578 + GFF2837 0.52 +0.3 263,767 - -0.1 263,856 + -0.4 264,036 - GFF2838 0.78 -3.6 264,036 - GFF2838 0.78 -1.7 264,080 + -0.9 264,080 + -0.3 264,080 + -0.7 264,080 + +1.6 264,080 + -0.1 264,080 + -0.7 264,080 + -0.2 264,080 + +1.3 264,080 + -0.4 264,080 + -1.3 264,080 + -0.8 264,080 + -0.3 264,081 - -0.2 264,081 - -2.9 264,081 - -2.1 264,081 - -0.8 264,081 - -1.7 264,081 - -0.4 264,081 - +2.2 264,081 - +0.3 264,081 - +0.1 264,081 - +0.7 264,081 - -0.1 264,081 - -0.1 264,179 + -2.3 264,180 - -0.1 264,180 - -0.3 264,424 + GFF2839 0.39 +2.1 264,425 - GFF2839 0.39 +0.3 264,425 - GFF2839 0.39 +0.3 264,450 + GFF2839 0.45 -1.5 264,450 + GFF2839 0.45 -1.4 264,450 + GFF2839 0.45 -1.7 264,450 + GFF2839 0.45 +0.1 264,450 + GFF2839 0.45 -1.8 264,450 + GFF2839 0.45 +0.2 264,451 - GFF2839 0.45 +1.5 264,451 - GFF2839 0.45 -0.7 264,451 - GFF2839 0.45 -1.5 264,451 - GFF2839 0.45 -0.1 264,583 + GFF2839 0.78 -0.9 264,584 - GFF2839 0.78 +0.4 264,692 + -0.2 264,693 - +1.3 264,693 - -1.7 264,751 + +0.0 264,751 + -1.3 264,751 + +0.4 264,751 + +1.2 264,751 + -1.0 264,751 + -1.3 264,752 - -2.9 264,752 - +0.3 264,752 - -0.6 264,752 - +0.8 264,752 - -1.8 264,752 - +1.0 264,767 + -4.1 264,767 + +0.2 264,767 + -2.2 264,767 + +0.9 264,767 + -0.6 264,767 + -2.4 264,767 + +0.1 264,768 - +0.6 264,768 - -0.2 264,768 - +1.2 264,768 - -1.2 264,768 - +1.9 264,768 - -1.9 264,783 + -0.7 264,783 + +1.2 264,783 + +1.5 264,783 + -0.5 264,783 + -0.3 264,783 + -1.7 264,784 - -1.5 264,784 - +0.5 264,784 - +1.0 264,784 - -0.3 264,784 - +1.7 264,818 + +0.3 264,818 + -0.5 264,818 + -0.3 264,819 - +2.0 264,819 - +0.4 264,819 - +0.3 264,841 + +0.5 264,841 + -1.3 264,841 + +0.9 264,841 + +0.3 264,841 + +1.4 264,841 + -1.3 264,842 - +1.1 264,842 - -0.5 264,842 - +0.7 264,882 - -1.3 264,889 + -1.2 264,889 + +2.6 264,889 + -0.3 264,889 + -2.4 264,889 + -1.3 264,890 - -3.2 264,890 - -2.6 264,890 - +1.0 264,890 - -0.6 264,890 - -2.9 264,890 - -1.8 264,890 - +1.1 264,890 - -2.8 264,890 - -0.1 264,890 - +0.8 264,890 - -3.7 264,906 + -0.3 264,957 + GFF2840 0.13 -2.5 264,957 + GFF2840 0.13 +0.7 264,957 + GFF2840 0.13 -0.1 264,957 + GFF2840 0.13 -0.0 264,957 + GFF2840 0.13 +0.8 264,957 + GFF2840 0.13 -0.9 264,957 + GFF2840 0.13 +0.1 264,957 + GFF2840 0.13 -0.7 264,957 + GFF2840 0.13 -1.9 264,957 + GFF2840 0.13 -0.4 264,958 - GFF2840 0.13 +1.9 264,958 - GFF2840 0.13 +0.3 264,958 - GFF2840 0.13 -0.7 264,958 - GFF2840 0.13 -4.1 264,958 - GFF2840 0.13 +0.9 264,958 - GFF2840 0.13 +0.3 264,958 - GFF2840 0.13 +2.6 264,958 - GFF2840 0.13 +1.2 264,958 - GFF2840 0.13 +0.5 264,958 - GFF2840 0.13 +1.2 264,958 - GFF2840 0.13 -2.3 264,958 - GFF2840 0.13 -0.7 264,958 - GFF2840 0.13 -2.5 264,958 - GFF2840 0.13 -2.2 264,958 - GFF2840 0.13 +0.4 264,958 - GFF2840 0.13 -1.9 264,958 - GFF2840 0.13 -0.7 264,958 - GFF2840 0.13 +0.3
Or see this region's nucleotide sequence