Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2810 and GFF2811 overlap by 1 nucleotides GFF2811 and GFF2812 are separated by 15 nucleotides GFF2812 and GFF2813 are separated by 170 nucleotides GFF2813 and GFF2814 are separated by 12 nucleotides GFF2814 and GFF2815 are separated by 21 nucleotides
GFF2810 - hypothetical protein, at 238,502 to 238,975
GFF2810
GFF2811 - Transcriptional regulator, YafY family, at 238,975 to 239,685
GFF2811
GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107
GFF2812
GFF2813 - LSU ribosomal protein L9p, at 241,278 to 241,730
GFF2813
GFF2814 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 241,743 to 242,024
GFF2814
GFF2815 - Primosomal replication protein N, at 242,046 to 242,288
GFF2815
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 238.789 kb on + strand, within GFF2810 at 238.789 kb on + strand, within GFF2810 at 238.790 kb on - strand, within GFF2810 at 238.857 kb on - strand, within GFF2810 at 238.931 kb on + strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 239.083 kb on + strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.434 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.642 kb on - strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.133 kb on + strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.134 kb on - strand at 241.174 kb on + strand at 241.174 kb on + strand at 241.174 kb on + strand at 241.175 kb on - strand at 241.175 kb on - strand at 241.294 kb on + strand at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.411 kb on + strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.412 kb on - strand, within GFF2813 at 241.657 kb on + strand, within GFF2813 at 241.723 kb on - strand at 241.744 kb on + strand at 241.744 kb on + strand at 241.744 kb on + strand at 241.745 kb on - strand at 241.745 kb on - strand at 241.765 kb on + strand at 241.766 kb on - strand at 242.070 kb on - strand at 242.070 kb on - strand at 242.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 238,789 + GFF2810 0.61 +0.0 238,789 + GFF2810 0.61 +1.7 238,790 - GFF2810 0.61 +0.5 238,857 - GFF2810 0.75 -0.9 238,931 + +0.6 238,932 - -2.1 238,932 - +1.9 238,932 - +0.2 238,932 - -0.6 238,932 - -1.3 239,083 + GFF2811 0.15 -0.3 239,084 - GFF2811 0.15 -0.5 239,084 - GFF2811 0.15 +1.6 239,341 + GFF2811 0.51 -0.4 239,341 + GFF2811 0.51 -0.1 239,341 + GFF2811 0.51 -0.1 239,341 + GFF2811 0.51 -0.7 239,342 - GFF2811 0.52 -1.8 239,342 - GFF2811 0.52 -2.3 239,342 - GFF2811 0.52 -2.1 239,342 - GFF2811 0.52 -0.1 239,342 - GFF2811 0.52 -3.0 239,342 - GFF2811 0.52 -1.6 239,342 - GFF2811 0.52 +0.6 239,342 - GFF2811 0.52 -3.7 239,434 + GFF2811 0.65 -0.7 239,491 + GFF2811 0.73 -0.2 239,491 + GFF2811 0.73 -1.1 239,491 + GFF2811 0.73 -2.3 239,491 + GFF2811 0.73 +1.9 239,491 + GFF2811 0.73 +0.3 239,492 - GFF2811 0.73 +1.5 239,492 - GFF2811 0.73 +0.2 239,642 - -1.7 239,683 + -0.1 239,683 + -2.1 239,683 + -0.9 239,683 + -1.8 239,683 + -2.1 239,683 + +0.3 239,683 + -0.9 239,683 + -1.9 239,683 + +0.3 239,683 + -0.4 239,684 - -1.0 239,684 - +0.3 239,684 - +0.2 239,684 - -1.5 239,684 - -0.3 239,684 - -0.5 239,684 - -4.4 239,684 - -0.6 239,684 - +3.9 239,684 - +1.2 239,684 - -1.6 239,706 - -1.9 239,706 - -2.7 239,723 + +1.2 239,723 + -1.5 239,723 + +0.6 239,723 + -2.1 239,723 + -0.4 239,723 + +0.3 239,723 + +0.8 239,723 + -0.5 239,723 + +0.3 239,724 - +1.5 239,724 - -0.4 239,724 - +0.3 239,724 - -0.4 239,724 - +0.0 239,724 - -1.1 241,133 + -0.7 241,133 + -2.1 241,133 + +0.9 241,133 + +0.3 241,133 + -0.2 241,133 + +2.0 241,133 + -0.5 241,133 + +1.5 241,134 - +0.6 241,134 - -3.3 241,134 - +2.6 241,134 - +1.3 241,134 - -0.4 241,134 - +0.9 241,134 - +1.6 241,134 - -0.5 241,134 - -0.9 241,174 + -0.9 241,174 + -0.9 241,174 + +1.3 241,175 - -1.9 241,175 - -1.1 241,294 + -1.5 241,411 + GFF2813 0.29 -1.7 241,411 + GFF2813 0.29 +1.5 241,411 + GFF2813 0.29 -0.6 241,411 + GFF2813 0.29 -2.3 241,411 + GFF2813 0.29 +3.7 241,411 + GFF2813 0.29 -0.4 241,411 + GFF2813 0.29 -0.2 241,411 + GFF2813 0.29 +1.9 241,411 + GFF2813 0.29 +0.9 241,412 - GFF2813 0.30 -1.8 241,412 - GFF2813 0.30 +0.6 241,412 - GFF2813 0.30 -1.3 241,412 - GFF2813 0.30 -2.7 241,412 - GFF2813 0.30 -2.5 241,412 - GFF2813 0.30 -3.2 241,412 - GFF2813 0.30 -1.8 241,412 - GFF2813 0.30 -1.9 241,412 - GFF2813 0.30 +1.5 241,412 - GFF2813 0.30 -0.4 241,412 - GFF2813 0.30 -3.0 241,412 - GFF2813 0.30 +2.9 241,657 + GFF2813 0.84 +1.9 241,723 - -1.5 241,744 + -1.3 241,744 + +0.3 241,744 + -0.1 241,745 - -0.7 241,745 - +1.9 241,765 + +1.9 241,766 - +0.3 242,070 - -0.5 242,070 - -2.7 242,070 - -1.8
Or see this region's nucleotide sequence