Strain Fitness in Variovorax sp. SCN45 around GFF2768

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2766 and GFF2767 are separated by 9 nucleotidesGFF2767 and GFF2768 are separated by 38 nucleotidesGFF2768 and GFF2769 are separated by 92 nucleotidesGFF2769 and GFF2770 are separated by 75 nucleotides GFF2766 - Pentapeptide repeat family protein, at 196,869 to 197,555 GFF2766 GFF2767 - MaoC domain protein dehydratase, at 197,565 to 198,044 GFF2767 GFF2768 - 3-ketoacyl-CoA thiolase 2 [fadN-fadA-fadE operon] (EC 2.3.1.16), at 198,083 to 199,216 GFF2768 GFF2769 - Transcriptional regulator, AcrR family, at 199,309 to 199,896 GFF2769 GFF2770 - BUG/TctC family periplasmic protein, at 199,972 to 200,964 GFF2770 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 198.004 kb on + strandat 198.004 kb on + strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.147 kb on + strandat 198.792 kb on + strand, within GFF2768at 198.792 kb on + strand, within GFF2768at 198.792 kb on + strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 198.793 kb on - strand, within GFF2768at 199.047 kb on + strand, within GFF2768at 199.234 kb on - strandat 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.415 kb on + strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.416 kb on - strand, within GFF2769at 199.610 kb on + strand, within GFF2769at 199.610 kb on + strand, within GFF2769at 199.610 kb on + strand, within GFF2769at 199.610 kb on + strand, within GFF2769at 199.610 kb on + strand, within GFF2769at 199.611 kb on - strand, within GFF2769at 199.611 kb on - strand, within GFF2769at 199.611 kb on - strand, within GFF2769at 199.611 kb on - strand, within GFF2769at 199.739 kb on + strand, within GFF2769at 199.739 kb on + strand, within GFF2769at 199.739 kb on + strand, within GFF2769at 199.740 kb on - strand, within GFF2769at 199.740 kb on - strand, within GFF2769at 199.740 kb on - strand, within GFF2769at 199.740 kb on - strand, within GFF2769at 199.799 kb on + strand, within GFF2769at 199.800 kb on - strand, within GFF2769at 199.898 kb on + strandat 199.898 kb on + strandat 199.898 kb on + strandat 199.899 kb on - strandat 199.899 kb on - strandat 199.899 kb on - strandat 199.902 kb on + strandat 199.906 kb on - strandat 199.906 kb on - strandat 199.907 kb on + strandat 199.907 kb on + strandat 199.908 kb on - strandat 199.908 kb on - strandat 199.908 kb on - strandat 200.036 kb on + strandat 200.141 kb on + strand, within GFF2770at 200.141 kb on + strand, within GFF2770at 200.141 kb on + strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.216 kb on + strand, within GFF2770at 200.216 kb on + strand, within GFF2770at 200.216 kb on + strand, within GFF2770

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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198,004 + -0.1
198,004 + -2.0
198,005 - -1.4
198,005 - -1.1
198,005 - -1.9
198,005 - +1.3
198,005 - +0.0
198,147 + -0.9
198,792 + GFF2768 0.63 -2.5
198,792 + GFF2768 0.63 +0.9
198,792 + GFF2768 0.63 -2.9
198,793 - GFF2768 0.63 -0.7
198,793 - GFF2768 0.63 -1.7
198,793 - GFF2768 0.63 -0.8
198,793 - GFF2768 0.63 -1.9
198,793 - GFF2768 0.63 -0.6
198,793 - GFF2768 0.63 -1.4
198,793 - GFF2768 0.63 -0.7
198,793 - GFF2768 0.63 -1.2
198,793 - GFF2768 0.63 -0.9
198,793 - GFF2768 0.63 +0.6
198,793 - GFF2768 0.63 -2.3
198,793 - GFF2768 0.63 +0.8
198,793 - GFF2768 0.63 +0.5
199,047 + GFF2768 0.85 -0.8
199,234 - -0.1
199,415 + GFF2769 0.18 -0.4
199,415 + GFF2769 0.18 -0.1
199,415 + GFF2769 0.18 +0.7
199,415 + GFF2769 0.18 -0.9
199,415 + GFF2769 0.18 -0.7
199,415 + GFF2769 0.18 +0.5
199,415 + GFF2769 0.18 -2.8
199,415 + GFF2769 0.18 +0.5
199,415 + GFF2769 0.18 -2.1
199,415 + GFF2769 0.18 +0.5
199,416 - GFF2769 0.18 -2.2
199,416 - GFF2769 0.18 -1.1
199,416 - GFF2769 0.18 -2.1
199,416 - GFF2769 0.18 +0.3
199,416 - GFF2769 0.18 -1.8
199,416 - GFF2769 0.18 -2.0
199,416 - GFF2769 0.18 -2.1
199,416 - GFF2769 0.18 -0.4
199,416 - GFF2769 0.18 -0.4
199,416 - GFF2769 0.18 -1.8
199,416 - GFF2769 0.18 -1.8
199,610 + GFF2769 0.51 +0.8
199,610 + GFF2769 0.51 -2.5
199,610 + GFF2769 0.51 -1.5
199,610 + GFF2769 0.51 -1.5
199,610 + GFF2769 0.51 +0.4
199,611 - GFF2769 0.51 +0.4
199,611 - GFF2769 0.51 +1.0
199,611 - GFF2769 0.51 -3.7
199,611 - GFF2769 0.51 -2.4
199,739 + GFF2769 0.73 +0.6
199,739 + GFF2769 0.73 -2.8
199,739 + GFF2769 0.73 +0.4
199,740 - GFF2769 0.73 +1.5
199,740 - GFF2769 0.73 +0.3
199,740 - GFF2769 0.73 -2.6
199,740 - GFF2769 0.73 +1.1
199,799 + GFF2769 0.83 -1.7
199,800 - GFF2769 0.84 -0.8
199,898 + -0.1
199,898 + +1.9
199,898 + -2.3
199,899 - +2.0
199,899 - -0.1
199,899 - -3.0
199,902 + +2.7
199,906 - -1.3
199,906 - +0.0
199,907 + -0.1
199,907 + -0.4
199,908 - -3.6
199,908 - +0.6
199,908 - -1.7
200,036 + -0.2
200,141 + GFF2770 0.17 -0.1
200,141 + GFF2770 0.17 +1.3
200,141 + GFF2770 0.17 -0.7
200,142 - GFF2770 0.17 +2.1
200,142 - GFF2770 0.17 +0.4
200,142 - GFF2770 0.17 +0.3
200,142 - GFF2770 0.17 -1.4
200,216 + GFF2770 0.25 +0.2
200,216 + GFF2770 0.25 -0.4
200,216 + GFF2770 0.25 -0.5

Or see this region's nucleotide sequence