Strain Fitness in Variovorax sp. SCN45 around GFF2745

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2742 and GFF2743 are separated by 91 nucleotidesGFF2743 and GFF2744 are separated by 94 nucleotidesGFF2744 and GFF2745 overlap by 4 nucleotidesGFF2745 and GFF2746 are separated by 14 nucleotidesGFF2746 and GFF2747 are separated by 76 nucleotides GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329 GFF2742 GFF2743 - hypothetical protein, at 178,421 to 178,726 GFF2743 GFF2744 - FIG00932369: hypothetical protein, at 178,821 to 179,321 GFF2744 GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460 GFF2745 GFF2746 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 180,475 to 180,999 GFF2746 GFF2747 - 17 kDa surface antigen, at 181,076 to 181,576 GFF2747 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.359 kb on + strandat 178.359 kb on + strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.368 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.423 kb on - strandat 178.423 kb on - strandat 178.768 kb on + strandat 178.778 kb on + strandat 178.778 kb on + strandat 178.778 kb on + strandat 178.779 kb on - strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.823 kb on - strandat 178.823 kb on - strandat 178.823 kb on - strandat 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.499 kb on + strand, within GFF2745at 179.773 kb on - strand, within GFF2745at 179.886 kb on + strand, within GFF2745at 179.887 kb on - strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.093 kb on + strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.396 kb on + strandat 180.397 kb on - strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.452 kb on - strandat 180.452 kb on - strandat 180.452 kb on - strandat 180.805 kb on + strand, within GFF2746at 180.805 kb on + strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.823 kb on + strand, within GFF2746at 180.823 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.876 kb on - strand, within GFF2746at 180.876 kb on - strand, within GFF2746at 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.195 kb on - strand, within GFF2747at 181.203 kb on + strand, within GFF2747at 181.204 kb on - strand, within GFF2747at 181.204 kb on - strand, within GFF2747at 181.343 kb on + strand, within GFF2747at 181.344 kb on - strand, within GFF2747at 181.417 kb on - strand, within GFF2747at 181.425 kb on + strand, within GFF2747at 181.425 kb on + strand, within GFF2747at 181.426 kb on - strand, within GFF2747at 181.426 kb on - strand, within GFF2747at 181.440 kb on + strand, within GFF2747

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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178,359 + +0.9
178,359 + -0.1
178,360 - -0.8
178,360 - -1.9
178,360 - +0.6
178,360 - +1.9
178,368 + -1.9
178,422 + -1.9
178,422 + +0.8
178,422 + +1.3
178,422 + -0.2
178,422 + -2.2
178,422 + -3.4
178,423 - -0.9
178,423 - -0.1
178,768 + +0.5
178,778 + -2.5
178,778 + -2.0
178,778 + -3.5
178,779 - +0.9
178,790 + -0.9
178,790 + +0.7
178,790 + -0.1
178,790 + -1.6
178,790 + +1.0
178,790 + -0.2
178,790 + +0.9
178,791 - +0.7
178,791 - +1.0
178,791 - +1.3
178,791 - -0.2
178,791 - -1.5
178,791 - +1.8
178,822 + -2.0
178,822 + +0.7
178,822 + -2.2
178,822 + -2.4
178,822 + -2.1
178,822 + -3.0
178,822 + +1.0
178,822 + -1.4
178,823 - +1.1
178,823 - -0.9
178,823 - -0.4
179,481 + GFF2745 0.14 +0.6
179,481 + GFF2745 0.14 +0.5
179,481 + GFF2745 0.14 +0.5
179,481 + GFF2745 0.14 -2.1
179,481 + GFF2745 0.14 +0.5
179,481 + GFF2745 0.14 -1.8
179,481 + GFF2745 0.14 -0.5
179,481 + GFF2745 0.14 -1.4
179,481 + GFF2745 0.14 +0.1
179,481 + GFF2745 0.14 -1.8
179,481 + GFF2745 0.14 +1.4
179,481 + GFF2745 0.14 -0.9
179,482 - GFF2745 0.14 -1.5
179,482 - GFF2745 0.14 -1.4
179,482 - GFF2745 0.14 +0.1
179,482 - GFF2745 0.14 -2.6
179,482 - GFF2745 0.14 -2.5
179,482 - GFF2745 0.14 +0.0
179,482 - GFF2745 0.14 -0.1
179,482 - GFF2745 0.14 +0.3
179,482 - GFF2745 0.14 -1.1
179,482 - GFF2745 0.14 -2.9
179,482 - GFF2745 0.14 -0.3
179,482 - GFF2745 0.14 +0.5
179,499 + GFF2745 0.16 -0.4
179,773 - GFF2745 0.40 +0.2
179,886 + GFF2745 0.50 -1.5
179,887 - GFF2745 0.50 -1.3
179,901 + GFF2745 0.51 +0.8
179,901 + GFF2745 0.51 -0.9
179,901 + GFF2745 0.51 -1.4
179,901 + GFF2745 0.51 -0.2
179,901 + GFF2745 0.51 -0.5
179,901 + GFF2745 0.51 -1.1
179,901 + GFF2745 0.51 -0.4
179,901 + GFF2745 0.51 -3.4
179,901 + GFF2745 0.51 -1.7
179,901 + GFF2745 0.51 +1.1
179,902 - GFF2745 0.51 -0.5
179,902 - GFF2745 0.51 -1.1
179,902 - GFF2745 0.51 -1.4
179,902 - GFF2745 0.51 -0.3
179,902 - GFF2745 0.51 -1.1
179,957 + GFF2745 0.56 +0.5
179,957 + GFF2745 0.56 -1.9
179,957 + GFF2745 0.56 -0.3
179,958 - GFF2745 0.56 -2.4
179,958 - GFF2745 0.56 -1.8
179,958 - GFF2745 0.56 -0.3
180,051 + GFF2745 0.64 -2.5
180,051 + GFF2745 0.64 -2.5
180,051 + GFF2745 0.64 -1.5
180,051 + GFF2745 0.64 +0.1
180,051 + GFF2745 0.64 +0.1
180,051 + GFF2745 0.64 -1.9
180,051 + GFF2745 0.64 +0.3
180,051 + GFF2745 0.64 -2.2
180,051 + GFF2745 0.64 +2.2
180,051 + GFF2745 0.64 +1.4
180,051 + GFF2745 0.64 -2.0
180,051 + GFF2745 0.64 +0.9
180,051 + GFF2745 0.64 +0.3
180,051 + GFF2745 0.64 -2.0
180,052 - GFF2745 0.64 -3.2
180,052 - GFF2745 0.64 -0.4
180,052 - GFF2745 0.64 -0.1
180,052 - GFF2745 0.64 -1.9
180,052 - GFF2745 0.64 -1.1
180,052 - GFF2745 0.64 +1.9
180,052 - GFF2745 0.64 -2.7
180,093 + GFF2745 0.68 -2.5
180,094 - GFF2745 0.68 -0.1
180,094 - GFF2745 0.68 -0.3
180,094 - GFF2745 0.68 -3.0
180,094 - GFF2745 0.68 -0.1
180,094 - GFF2745 0.68 -1.2
180,094 - GFF2745 0.68 -0.9
180,396 + +1.7
180,397 - -2.4
180,451 + -0.1
180,451 + -0.7
180,451 + -1.2
180,452 - -1.4
180,452 - +0.0
180,452 - -1.3
180,805 + GFF2746 0.63 -1.4
180,805 + GFF2746 0.63 +0.2
180,806 - GFF2746 0.63 +1.7
180,806 - GFF2746 0.63 -2.3
180,806 - GFF2746 0.63 +2.4
180,823 + GFF2746 0.66 +0.3
180,823 + GFF2746 0.66 +0.1
180,875 + GFF2746 0.76 -0.4
180,875 + GFF2746 0.76 -2.1
180,875 + GFF2746 0.76 -1.1
180,875 + GFF2746 0.76 -0.6
180,875 + GFF2746 0.76 -2.7
180,876 - GFF2746 0.76 -0.4
180,876 - GFF2746 0.76 -0.9
181,077 + -1.8
181,077 + +0.1
181,077 + -2.1
181,077 + +0.6
181,077 + +0.9
181,077 + -1.4
181,077 + -2.6
181,077 + +0.9
181,077 + -0.1
181,077 + -2.4
181,077 + -1.2
181,077 + +0.4
181,078 - -1.2
181,078 - +2.0
181,078 - -1.5
181,078 - +0.7
181,078 - -1.9
181,078 - -2.0
181,078 - +1.3
181,194 + GFF2747 0.24 -2.9
181,194 + GFF2747 0.24 +0.2
181,194 + GFF2747 0.24 -0.2
181,194 + GFF2747 0.24 +2.4
181,194 + GFF2747 0.24 +0.2
181,194 + GFF2747 0.24 -0.4
181,194 + GFF2747 0.24 -2.3
181,195 - GFF2747 0.24 -1.9
181,203 + GFF2747 0.25 -0.1
181,204 - GFF2747 0.26 +0.3
181,204 - GFF2747 0.26 +2.5
181,343 + GFF2747 0.53 -1.9
181,344 - GFF2747 0.53 -0.2
181,417 - GFF2747 0.68 +1.9
181,425 + GFF2747 0.70 -2.2
181,425 + GFF2747 0.70 +0.4
181,426 - GFF2747 0.70 +0.9
181,426 - GFF2747 0.70 -0.4
181,440 + GFF2747 0.73 -0.3

Or see this region's nucleotide sequence