Strain Fitness in Variovorax sp. SCN45 around GFF2635

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2633 and GFF2634 are separated by 70 nucleotidesGFF2634 and GFF2635 are separated by 12 nucleotidesGFF2635 and GFF2636 overlap by 17 nucleotides GFF2633 - Proline iminopeptidase (EC 3.4.11.5), at 44,537 to 45,490 GFF2633 GFF2634 - FIG00464095: hypothetical protein, at 45,561 to 45,983 GFF2634 GFF2635 - hypothetical protein, at 45,996 to 48,956 GFF2635 GFF2636 - hypothetical protein, at 48,940 to 50,802 GFF2636 Position (kb) 45 46 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.335 kb on + strand, within GFF2633at 45.428 kb on + strandat 45.428 kb on + strandat 45.429 kb on - strandat 45.429 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.649 kb on - strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.868 kb on + strand, within GFF2634at 45.879 kb on + strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.982 kb on - strandat 46.432 kb on + strand, within GFF2635at 46.433 kb on - strand, within GFF2635at 46.457 kb on + strand, within GFF2635at 46.458 kb on - strand, within GFF2635at 46.763 kb on - strand, within GFF2635at 46.844 kb on - strand, within GFF2635at 46.844 kb on - strand, within GFF2635at 47.167 kb on - strand, within GFF2635at 47.590 kb on + strand, within GFF2635at 47.689 kb on + strand, within GFF2635at 47.689 kb on + strand, within GFF2635at 47.689 kb on + strand, within GFF2635at 47.896 kb on + strand, within GFF2635at 47.896 kb on + strand, within GFF2635at 47.896 kb on + strand, within GFF2635at 47.897 kb on - strand, within GFF2635at 47.897 kb on - strand, within GFF2635at 48.244 kb on + strand, within GFF2635at 48.245 kb on - strand, within GFF2635at 48.313 kb on - strand, within GFF2635at 48.313 kb on - strand, within GFF2635at 48.313 kb on - strand, within GFF2635at 49.014 kb on - strandat 49.103 kb on + strandat 49.103 kb on + strandat 49.103 kb on + strandat 49.103 kb on + strandat 49.103 kb on + strandat 49.103 kb on + strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.104 kb on - strandat 49.165 kb on + strand, within GFF2636at 49.166 kb on - strand, within GFF2636at 49.166 kb on - strand, within GFF2636at 49.253 kb on + strand, within GFF2636at 49.253 kb on + strand, within GFF2636at 49.253 kb on + strand, within GFF2636at 49.254 kb on - strand, within GFF2636at 49.487 kb on + strand, within GFF2636at 49.487 kb on + strand, within GFF2636at 49.488 kb on - strand, within GFF2636at 49.488 kb on - strand, within GFF2636at 49.696 kb on + strand, within GFF2636at 49.751 kb on + strand, within GFF2636at 49.751 kb on + strand, within GFF2636at 49.751 kb on + strand, within GFF2636at 49.752 kb on - strand, within GFF2636at 49.752 kb on - strand, within GFF2636at 49.766 kb on + strand, within GFF2636at 49.766 kb on + strand, within GFF2636at 49.766 kb on + strand, within GFF2636at 49.767 kb on - strand, within GFF2636at 49.767 kb on - strand, within GFF2636at 49.767 kb on - strand, within GFF2636at 49.767 kb on - strand, within GFF2636at 49.836 kb on - strand, within GFF2636at 49.841 kb on + strand, within GFF2636at 49.841 kb on + strand, within GFF2636at 49.841 kb on + strand, within GFF2636at 49.842 kb on - strand, within GFF2636at 49.842 kb on - strand, within GFF2636at 49.842 kb on - strand, within GFF2636

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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45,082 + GFF2633 0.57 -2.8
45,082 + GFF2633 0.57 -0.9
45,082 + GFF2633 0.57 -0.7
45,242 + GFF2633 0.74 +0.3
45,242 + GFF2633 0.74 +2.7
45,243 - GFF2633 0.74 +0.6
45,243 - GFF2633 0.74 -1.6
45,243 - GFF2633 0.74 -0.1
45,243 - GFF2633 0.74 +0.2
45,243 - GFF2633 0.74 +1.2
45,335 + GFF2633 0.84 -0.8
45,428 + -0.7
45,428 + -2.4
45,429 - +1.5
45,429 - -0.3
45,514 - +0.1
45,514 - -2.9
45,514 - +1.3
45,649 - GFF2634 0.21 +0.2
45,801 + GFF2634 0.57 -1.8
45,801 + GFF2634 0.57 -0.4
45,801 + GFF2634 0.57 +1.3
45,801 + GFF2634 0.57 -2.2
45,801 + GFF2634 0.57 +0.7
45,801 + GFF2634 0.57 +0.1
45,802 - GFF2634 0.57 -0.7
45,802 - GFF2634 0.57 +0.9
45,802 - GFF2634 0.57 -1.3
45,802 - GFF2634 0.57 -1.3
45,868 + GFF2634 0.73 -0.4
45,879 + GFF2634 0.75 -2.7
45,880 - GFF2634 0.75 -0.2
45,880 - GFF2634 0.75 +0.2
45,897 + GFF2634 0.79 -0.9
45,897 + GFF2634 0.79 -0.6
45,897 + GFF2634 0.79 -0.2
45,897 + GFF2634 0.79 +0.5
45,897 + GFF2634 0.79 -0.4
45,897 + GFF2634 0.79 +0.7
45,897 + GFF2634 0.79 -0.1
45,898 - GFF2634 0.80 -2.0
45,898 - GFF2634 0.80 +1.5
45,898 - GFF2634 0.80 -0.4
45,898 - GFF2634 0.80 -2.3
45,981 + +0.3
45,981 + -0.6
45,981 + +1.0
45,981 + -2.4
45,981 + -0.2
45,982 - -1.0
46,432 + GFF2635 0.15 +0.3
46,433 - GFF2635 0.15 -0.4
46,457 + GFF2635 0.16 +2.9
46,458 - GFF2635 0.16 -0.4
46,763 - GFF2635 0.26 -3.0
46,844 - GFF2635 0.29 -3.5
46,844 - GFF2635 0.29 -3.1
47,167 - GFF2635 0.40 -3.1
47,590 + GFF2635 0.54 +0.1
47,689 + GFF2635 0.57 -0.7
47,689 + GFF2635 0.57 -0.3
47,689 + GFF2635 0.57 -0.0
47,896 + GFF2635 0.64 -0.9
47,896 + GFF2635 0.64 -0.9
47,896 + GFF2635 0.64 -0.3
47,897 - GFF2635 0.64 -0.3
47,897 - GFF2635 0.64 -1.3
48,244 + GFF2635 0.76 -1.1
48,245 - GFF2635 0.76 -0.7
48,313 - GFF2635 0.78 -0.1
48,313 - GFF2635 0.78 +1.0
48,313 - GFF2635 0.78 +1.2
49,014 - -2.6
49,103 + -0.4
49,103 + -0.1
49,103 + -2.3
49,103 + -2.2
49,103 + -1.7
49,103 + -1.2
49,104 - +1.0
49,104 - +1.2
49,104 - -0.1
49,104 - -0.2
49,104 - -0.7
49,104 - +1.1
49,104 - +2.1
49,165 + GFF2636 0.12 +1.6
49,166 - GFF2636 0.12 -0.1
49,166 - GFF2636 0.12 +0.9
49,253 + GFF2636 0.17 -1.9
49,253 + GFF2636 0.17 +0.9
49,253 + GFF2636 0.17 -0.9
49,254 - GFF2636 0.17 -1.7
49,487 + GFF2636 0.29 -1.3
49,487 + GFF2636 0.29 -1.4
49,488 - GFF2636 0.29 -0.9
49,488 - GFF2636 0.29 +0.4
49,696 + GFF2636 0.41 +0.4
49,751 + GFF2636 0.44 -0.3
49,751 + GFF2636 0.44 +0.9
49,751 + GFF2636 0.44 +0.4
49,752 - GFF2636 0.44 -1.9
49,752 - GFF2636 0.44 -0.1
49,766 + GFF2636 0.44 +0.9
49,766 + GFF2636 0.44 -2.1
49,766 + GFF2636 0.44 -1.5
49,767 - GFF2636 0.44 -2.0
49,767 - GFF2636 0.44 +0.6
49,767 - GFF2636 0.44 +1.2
49,767 - GFF2636 0.44 -0.9
49,836 - GFF2636 0.48 +1.1
49,841 + GFF2636 0.48 -0.2
49,841 + GFF2636 0.48 +1.1
49,841 + GFF2636 0.48 -0.9
49,842 - GFF2636 0.48 -1.4
49,842 - GFF2636 0.48 -1.7
49,842 - GFF2636 0.48 -0.3

Or see this region's nucleotide sequence