Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2475 and GFF2476 are separated by 130 nucleotides GFF2476 and GFF2477 are separated by 37 nucleotides GFF2477 and GFF2478 are separated by 99 nucleotides GFF2478 and GFF2479 are separated by 142 nucleotides GFF2479 and GFF2480 are separated by 23 nucleotides
GFF2475 - no description, at 533,788 to 535,158
GFF2475
GFF2476 - Tripartite tricarboxylate transporter TctB family, at 535,289 to 535,777
GFF2476
GFF2477 - Tripartite tricarboxylate transporter TctA family, at 535,815 to 537,326
GFF2477
GFF2478 - no description, at 537,426 to 537,950
GFF2478
GFF2479 - hypothetical protein, at 538,093 to 538,272
GFF2479
GFF2480 - Urease accessory protein UreG, at 538,296 to 538,946
GFF2480
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 534.887 kb on - strand, within GFF2475 at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.409 kb on + strand, within GFF2476 at 535.410 kb on - strand, within GFF2476 at 535.622 kb on + strand, within GFF2476 at 535.623 kb on - strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.713 kb on - strand, within GFF2476 at 535.764 kb on + strand at 535.826 kb on + strand at 535.827 kb on - strand at 536.106 kb on + strand, within GFF2477 at 536.235 kb on - strand, within GFF2477 at 536.235 kb on - strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.653 kb on - strand, within GFF2477 at 536.985 kb on + strand, within GFF2477 at 536.985 kb on + strand, within GFF2477 at 536.986 kb on - strand, within GFF2477 at 536.986 kb on - strand, within GFF2477 at 536.986 kb on - strand, within GFF2477 at 537.093 kb on + strand, within GFF2477 at 537.093 kb on + strand, within GFF2477 at 537.094 kb on - strand, within GFF2477 at 537.094 kb on - strand, within GFF2477 at 537.094 kb on - strand, within GFF2477 at 537.390 kb on - strand at 537.390 kb on - strand at 537.714 kb on + strand, within GFF2478 at 537.714 kb on + strand, within GFF2478 at 537.715 kb on - strand, within GFF2478 at 537.832 kb on - strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.902 kb on - strand at 537.913 kb on - strand at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 534,887 - GFF2475 0.80 -0.8 535,210 + -1.3 535,210 + +2.0 535,210 + -0.2 535,210 + -1.0 535,374 - GFF2476 0.17 +0.5 535,374 - GFF2476 0.17 -1.2 535,374 - GFF2476 0.17 +0.5 535,374 - GFF2476 0.17 -0.8 535,409 + GFF2476 0.25 -2.7 535,410 - GFF2476 0.25 +1.6 535,622 + GFF2476 0.68 -3.1 535,623 - GFF2476 0.68 -2.2 535,712 + GFF2476 0.87 -0.7 535,712 + GFF2476 0.87 +0.6 535,713 - GFF2476 0.87 -1.7 535,764 + -2.2 535,826 + +0.8 535,827 - -2.6 536,106 + GFF2477 0.19 +0.2 536,235 - GFF2477 0.28 +1.0 536,235 - GFF2477 0.28 +0.0 536,652 + GFF2477 0.55 -2.3 536,652 + GFF2477 0.55 +0.9 536,652 + GFF2477 0.55 -1.0 536,653 - GFF2477 0.55 +1.0 536,985 + GFF2477 0.77 -0.4 536,985 + GFF2477 0.77 -2.0 536,986 - GFF2477 0.77 -1.2 536,986 - GFF2477 0.77 -0.7 536,986 - GFF2477 0.77 -1.4 537,093 + GFF2477 0.85 -1.2 537,093 + GFF2477 0.85 +0.4 537,094 - GFF2477 0.85 +2.1 537,094 - GFF2477 0.85 +2.6 537,094 - GFF2477 0.85 +1.2 537,390 - -0.8 537,390 - +0.6 537,714 + GFF2478 0.55 +0.0 537,714 + GFF2478 0.55 -0.1 537,715 - GFF2478 0.55 -0.8 537,832 - GFF2478 0.77 +0.6 537,864 + GFF2478 0.83 -0.4 537,864 + GFF2478 0.83 -1.5 537,864 + GFF2478 0.83 +2.6 537,864 + GFF2478 0.83 +0.2 537,864 + GFF2478 0.83 -0.2 537,864 + GFF2478 0.83 -1.3 537,864 + GFF2478 0.83 +0.1 537,865 - GFF2478 0.84 -1.5 537,865 - GFF2478 0.84 -0.6 537,865 - GFF2478 0.84 -1.7 537,902 - -2.9 537,913 - -0.5 538,169 - GFF2479 0.42 +1.5 538,169 - GFF2479 0.42 -4.1 538,169 - GFF2479 0.42 +0.4 538,255 + +0.9
Or see this region's nucleotide sequence