Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2457 and GFF2456 overlap by 2 nucleotides GFF2456 and GFF2458 are separated by 68 nucleotides GFF2458 and GFF2459 overlap by 8 nucleotides
GFF2457 - no description, at 513,791 to 514,078
GFF2457
GFF2456 - no description, at 514,077 to 514,409
GFF2456
GFF2458 - CzcABC family efflux RND transporter, membrane fusion protein, at 514,478 to 515,608
GFF2458
GFF2459 - CzcABC family efflux RND transporter, transmembrane protein, at 515,601 to 518,732
GFF2459
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 513.578 kb on - strand at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.942 kb on - strand, within GFF2457 at 514.955 kb on + strand, within GFF2458 at 514.955 kb on + strand, within GFF2458 at 514.956 kb on - strand, within GFF2458 at 515.063 kb on + strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.124 kb on - strand, within GFF2458 at 515.288 kb on + strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.676 kb on + strand at 515.988 kb on + strand, within GFF2459 at 515.988 kb on + strand, within GFF2459 at 515.989 kb on - strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.019 kb on - strand, within GFF2459 at 516.183 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.274 kb on - strand, within GFF2459 at 516.274 kb on - strand, within GFF2459
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 513,578 - -0.4 513,941 + GFF2457 0.52 +0.9 513,941 + GFF2457 0.52 +1.4 513,941 + GFF2457 0.52 +1.0 513,942 - GFF2457 0.52 +0.2 514,955 + GFF2458 0.42 -1.2 514,955 + GFF2458 0.42 +1.8 514,956 - GFF2458 0.42 -0.4 515,063 + GFF2458 0.52 +0.6 515,064 - GFF2458 0.52 -0.4 515,064 - GFF2458 0.52 -0.1 515,124 - GFF2458 0.57 -1.2 515,288 + GFF2458 0.72 -1.8 515,289 - GFF2458 0.72 +2.2 515,289 - GFF2458 0.72 +1.3 515,457 - GFF2458 0.87 +0.2 515,457 - GFF2458 0.87 +0.7 515,676 + -1.0 515,988 + GFF2459 0.12 +0.6 515,988 + GFF2459 0.12 -3.6 515,989 - GFF2459 0.12 -3.2 516,012 + GFF2459 0.13 -3.6 516,012 + GFF2459 0.13 -0.9 516,019 - GFF2459 0.13 -1.6 516,183 + GFF2459 0.19 +1.4 516,273 + GFF2459 0.21 -1.4 516,273 + GFF2459 0.21 -1.6 516,274 - GFF2459 0.21 -1.7 516,274 - GFF2459 0.21 -0.1
Or see this region's nucleotide sequence