Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2375 and GFF2376 are separated by 93 nucleotides GFF2376 and GFF2377 are separated by 39 nucleotides GFF2377 and GFF2378 are separated by 11 nucleotides
GFF2375 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 429,303 to 431,558
GFF2375
GFF2376 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 431,652 to 431,855
GFF2376
GFF2377 - Guanylate kinase (EC 2.7.4.8), at 431,895 to 432,515
GFF2377
GFF2378 - UPF0701 protein YicC, at 432,527 to 433,450
GFF2378
Position (kb) 431
432 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 430.664 kb on - strand, within GFF2375 at 430.900 kb on + strand, within GFF2375 at 430.987 kb on + strand, within GFF2375 at 431.350 kb on + strand at 431.562 kb on + strand at 431.563 kb on - strand at 431.602 kb on + strand at 431.602 kb on + strand at 431.602 kb on + strand at 431.603 kb on - strand at 431.782 kb on + strand, within GFF2376 at 431.782 kb on + strand, within GFF2376 at 432.587 kb on + strand at 432.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 430,664 - GFF2375 0.60 +2.1 430,900 + GFF2375 0.71 +2.1 430,987 + GFF2375 0.75 +0.5 431,350 + +1.1 431,562 + +0.1 431,563 - -0.8 431,602 + -0.5 431,602 + -0.5 431,602 + -4.4 431,603 - -1.3 431,782 + GFF2376 0.64 +0.1 431,782 + GFF2376 0.64 -0.5 432,587 + -2.6 432,588 - +0.3
Or see this region's nucleotide sequence