Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2009 and GFF2010 are separated by 16 nucleotides GFF2010 and GFF2011 are separated by 1 nucleotides GFF2011 and GFF2012 are separated by 15 nucleotides GFF2012 and GFF2013 are separated by 110 nucleotides
GFF2009 - Dienelactone hydrolase and related enzymes, at 54,274 to 55,140
GFF2009
GFF2010 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 55,157 to 55,963
GFF2010
GFF2011 - hypothetical protein, at 55,965 to 56,468
GFF2011
GFF2012 - Putative transmembrane protein, at 56,484 to 57,158
GFF2012
GFF2013 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 57,269 to 59,272
GFF2013
Position (kb) 55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 54.985 kb on + strand, within GFF2009 at 54.985 kb on + strand, within GFF2009 at 55.172 kb on + strand at 55.172 kb on + strand at 55.172 kb on + strand at 55.173 kb on - strand at 55.173 kb on - strand at 55.173 kb on - strand at 55.391 kb on + strand, within GFF2010 at 55.392 kb on - strand, within GFF2010 at 55.496 kb on + strand, within GFF2010 at 55.496 kb on + strand, within GFF2010 at 55.496 kb on + strand, within GFF2010 at 55.496 kb on + strand, within GFF2010 at 55.496 kb on + strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.497 kb on - strand, within GFF2010 at 55.560 kb on - strand, within GFF2010 at 55.560 kb on - strand, within GFF2010 at 55.560 kb on - strand, within GFF2010 at 55.560 kb on - strand, within GFF2010 at 55.610 kb on + strand, within GFF2010 at 55.611 kb on - strand, within GFF2010 at 55.649 kb on + strand, within GFF2010 at 55.649 kb on + strand, within GFF2010 at 55.649 kb on + strand, within GFF2010 at 55.649 kb on + strand, within GFF2010 at 55.650 kb on - strand, within GFF2010 at 56.307 kb on + strand, within GFF2011 at 56.307 kb on + strand, within GFF2011 at 56.307 kb on + strand, within GFF2011 at 56.307 kb on + strand, within GFF2011 at 56.307 kb on + strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.308 kb on - strand, within GFF2011 at 56.559 kb on + strand, within GFF2012 at 56.559 kb on + strand, within GFF2012 at 56.560 kb on - strand, within GFF2012 at 56.560 kb on - strand, within GFF2012 at 56.560 kb on - strand, within GFF2012 at 56.560 kb on - strand, within GFF2012 at 56.593 kb on - strand, within GFF2012 at 56.593 kb on - strand, within GFF2012 at 57.156 kb on + strand at 57.156 kb on + strand at 57.156 kb on + strand at 57.274 kb on + strand at 57.282 kb on + strand at 57.282 kb on + strand at 57.283 kb on - strand at 57.283 kb on - strand at 57.286 kb on + strand at 57.286 kb on + strand at 57.286 kb on + strand at 57.286 kb on + strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.292 kb on + strand at 57.363 kb on - strand at 57.363 kb on - strand at 57.437 kb on - strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.446 kb on + strand at 57.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 54,985 + GFF2009 0.82 -0.6 54,985 + GFF2009 0.82 +0.2 55,172 + +0.6 55,172 + +0.2 55,172 + -1.0 55,173 - -0.6 55,173 - -2.9 55,173 - +0.1 55,391 + GFF2010 0.29 -0.2 55,392 - GFF2010 0.29 -0.1 55,496 + GFF2010 0.42 -0.1 55,496 + GFF2010 0.42 +0.6 55,496 + GFF2010 0.42 -1.7 55,496 + GFF2010 0.42 -0.8 55,496 + GFF2010 0.42 +1.5 55,497 - GFF2010 0.42 -0.8 55,497 - GFF2010 0.42 -1.1 55,497 - GFF2010 0.42 -1.1 55,497 - GFF2010 0.42 -0.2 55,497 - GFF2010 0.42 -1.4 55,497 - GFF2010 0.42 -1.0 55,497 - GFF2010 0.42 -0.1 55,497 - GFF2010 0.42 -2.1 55,497 - GFF2010 0.42 -0.4 55,497 - GFF2010 0.42 +2.2 55,560 - GFF2010 0.50 +0.2 55,560 - GFF2010 0.50 -1.9 55,560 - GFF2010 0.50 +0.2 55,560 - GFF2010 0.50 -0.6 55,610 + GFF2010 0.56 -2.1 55,611 - GFF2010 0.56 +1.2 55,649 + GFF2010 0.61 -2.8 55,649 + GFF2010 0.61 +0.4 55,649 + GFF2010 0.61 -0.2 55,649 + GFF2010 0.61 -1.7 55,650 - GFF2010 0.61 -2.2 56,307 + GFF2011 0.68 +2.5 56,307 + GFF2011 0.68 -1.0 56,307 + GFF2011 0.68 -1.9 56,307 + GFF2011 0.68 -0.7 56,307 + GFF2011 0.68 +0.3 56,308 - GFF2011 0.68 +0.0 56,308 - GFF2011 0.68 +0.0 56,308 - GFF2011 0.68 -1.1 56,308 - GFF2011 0.68 +0.2 56,308 - GFF2011 0.68 -1.0 56,308 - GFF2011 0.68 -1.0 56,559 + GFF2012 0.11 -2.7 56,559 + GFF2012 0.11 +0.5 56,560 - GFF2012 0.11 +0.9 56,560 - GFF2012 0.11 -1.0 56,560 - GFF2012 0.11 +2.2 56,560 - GFF2012 0.11 +2.6 56,593 - GFF2012 0.16 -0.5 56,593 - GFF2012 0.16 +0.3 57,156 + -1.2 57,156 + -1.1 57,156 + +1.2 57,274 + -4.5 57,282 + +0.2 57,282 + -0.6 57,283 - -0.2 57,283 - -0.3 57,286 + -0.4 57,286 + -2.6 57,286 + +0.0 57,286 + -2.2 57,287 - -3.0 57,287 - +0.7 57,287 - -0.3 57,287 - -0.4 57,287 - -1.3 57,287 - -1.5 57,292 + -2.4 57,363 - +0.6 57,363 - -0.3 57,437 - -0.6 57,446 + -2.8 57,446 + -4.1 57,446 + -1.2 57,446 + -0.6 57,446 + -4.3 57,446 + -1.4 57,446 + -0.1 57,447 - -1.9
Or see this region's nucleotide sequence