Strain Fitness in Variovorax sp. SCN45 around GFF2009

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2008 and GFF2009 are separated by 21 nucleotidesGFF2009 and GFF2010 are separated by 16 nucleotidesGFF2010 and GFF2011 are separated by 1 nucleotides GFF2008 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 52,624 to 54,252 GFF2008 GFF2009 - Dienelactone hydrolase and related enzymes, at 54,274 to 55,140 GFF2009 GFF2010 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 55,157 to 55,963 GFF2010 GFF2011 - hypothetical protein, at 55,965 to 56,468 GFF2011 Position (kb) 54 55 56Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 53.512 kb on + strand, within GFF2008at 53.512 kb on + strand, within GFF2008at 53.512 kb on + strand, within GFF2008at 53.512 kb on + strand, within GFF2008at 53.512 kb on + strand, within GFF2008at 53.512 kb on + strand, within GFF2008at 53.797 kb on + strand, within GFF2008at 53.797 kb on + strand, within GFF2008at 53.908 kb on + strand, within GFF2008at 53.908 kb on + strand, within GFF2008at 53.908 kb on + strand, within GFF2008at 53.908 kb on + strand, within GFF2008at 53.908 kb on + strand, within GFF2008at 53.909 kb on - strand, within GFF2008at 53.929 kb on + strand, within GFF2008at 53.929 kb on + strand, within GFF2008at 53.930 kb on - strand, within GFF2008at 54.097 kb on + strandat 54.098 kb on - strandat 54.098 kb on - strandat 54.118 kb on + strandat 54.118 kb on + strandat 54.118 kb on + strandat 54.118 kb on + strandat 54.119 kb on - strandat 54.119 kb on - strandat 54.121 kb on + strandat 54.121 kb on + strandat 54.121 kb on + strandat 54.121 kb on + strandat 54.122 kb on - strandat 54.122 kb on - strandat 54.122 kb on - strandat 54.122 kb on - strandat 54.122 kb on - strandat 54.122 kb on - strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.428 kb on - strand, within GFF2009at 54.521 kb on - strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.620 kb on - strand, within GFF2009at 54.643 kb on + strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.694 kb on + strand, within GFF2009at 54.713 kb on - strand, within GFF2009at 54.893 kb on - strand, within GFF2009at 54.928 kb on + strand, within GFF2009at 54.928 kb on + strand, within GFF2009at 54.929 kb on - strand, within GFF2009at 54.985 kb on + strand, within GFF2009at 54.985 kb on + strand, within GFF2009at 55.172 kb on + strandat 55.172 kb on + strandat 55.172 kb on + strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.391 kb on + strand, within GFF2010at 55.392 kb on - strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.610 kb on + strand, within GFF2010at 55.611 kb on - strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.650 kb on - strand, within GFF2010

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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53,512 + GFF2008 0.55 -1.7
53,512 + GFF2008 0.55 -1.0
53,512 + GFF2008 0.55 -2.9
53,512 + GFF2008 0.55 -2.5
53,512 + GFF2008 0.55 +1.4
53,512 + GFF2008 0.55 -2.1
53,797 + GFF2008 0.72 -2.3
53,797 + GFF2008 0.72 -0.4
53,908 + GFF2008 0.79 -3.1
53,908 + GFF2008 0.79 -2.2
53,908 + GFF2008 0.79 -1.8
53,908 + GFF2008 0.79 -0.5
53,908 + GFF2008 0.79 -2.1
53,909 - GFF2008 0.79 -2.0
53,929 + GFF2008 0.80 -1.7
53,929 + GFF2008 0.80 -2.6
53,930 - GFF2008 0.80 -0.6
54,097 + -0.8
54,098 - -0.8
54,098 - -1.7
54,118 + -0.4
54,118 + -1.0
54,118 + +0.5
54,118 + -2.8
54,119 - -0.1
54,119 - -2.2
54,121 + +0.1
54,121 + -3.7
54,121 + -1.3
54,121 + -2.3
54,122 - -0.6
54,122 - -4.8
54,122 - -1.3
54,122 - -2.9
54,122 - -2.4
54,122 - +0.6
54,250 + -1.6
54,250 + +1.6
54,250 + -3.2
54,250 + +0.6
54,250 + +0.1
54,250 + +0.7
54,250 + +0.8
54,250 + -1.2
54,251 - +0.8
54,251 - +1.2
54,251 - +0.9
54,251 - -1.0
54,251 - -0.8
54,251 - -3.4
54,251 - +1.4
54,251 - +1.8
54,427 + GFF2009 0.18 -1.6
54,427 + GFF2009 0.18 -2.6
54,427 + GFF2009 0.18 -1.9
54,427 + GFF2009 0.18 +1.1
54,427 + GFF2009 0.18 +0.5
54,428 - GFF2009 0.18 -1.7
54,521 - GFF2009 0.28 -1.8
54,619 + GFF2009 0.40 +0.6
54,619 + GFF2009 0.40 -0.1
54,619 + GFF2009 0.40 +0.5
54,619 + GFF2009 0.40 -0.4
54,619 + GFF2009 0.40 +0.7
54,619 + GFF2009 0.40 +1.3
54,619 + GFF2009 0.40 -1.4
54,619 + GFF2009 0.40 +0.3
54,620 - GFF2009 0.40 +1.5
54,643 + GFF2009 0.43 +2.3
54,644 - GFF2009 0.43 -2.1
54,644 - GFF2009 0.43 -2.1
54,644 - GFF2009 0.43 +0.1
54,694 + GFF2009 0.48 +3.2
54,713 - GFF2009 0.51 -0.1
54,893 - GFF2009 0.71 -0.4
54,928 + GFF2009 0.75 +0.3
54,928 + GFF2009 0.75 +1.2
54,929 - GFF2009 0.76 -2.6
54,985 + GFF2009 0.82 -0.6
54,985 + GFF2009 0.82 +0.2
55,172 + +0.6
55,172 + +0.2
55,172 + -1.0
55,173 - -0.6
55,173 - -2.9
55,173 - +0.1
55,391 + GFF2010 0.29 -0.2
55,392 - GFF2010 0.29 -0.1
55,496 + GFF2010 0.42 -0.1
55,496 + GFF2010 0.42 +0.6
55,496 + GFF2010 0.42 -1.7
55,496 + GFF2010 0.42 -0.8
55,496 + GFF2010 0.42 +1.5
55,497 - GFF2010 0.42 -0.8
55,497 - GFF2010 0.42 -1.1
55,497 - GFF2010 0.42 -1.1
55,497 - GFF2010 0.42 -0.2
55,497 - GFF2010 0.42 -1.4
55,497 - GFF2010 0.42 -1.0
55,497 - GFF2010 0.42 -0.1
55,497 - GFF2010 0.42 -2.1
55,497 - GFF2010 0.42 -0.4
55,497 - GFF2010 0.42 +2.2
55,560 - GFF2010 0.50 +0.2
55,560 - GFF2010 0.50 -1.9
55,560 - GFF2010 0.50 +0.2
55,560 - GFF2010 0.50 -0.6
55,610 + GFF2010 0.56 -2.1
55,611 - GFF2010 0.56 +1.2
55,649 + GFF2010 0.61 -2.8
55,649 + GFF2010 0.61 +0.4
55,649 + GFF2010 0.61 -0.2
55,649 + GFF2010 0.61 -1.7
55,650 - GFF2010 0.61 -2.2

Or see this region's nucleotide sequence