Strain Fitness in Variovorax sp. SCN45 around GFF1966

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
7,268	+				-0.4
7,269	-				-1.1
7,269	-				-1.6
7,269	-				+0.3
7,285	+				-2.1
7,285	+				+0.2
7,286	-				-3.2
7,286	-				+1.1
7,286	-				+1.7
7,286	-				-1.4
7,663	+		GFF1965	0.36	-2.6
7,663	+		GFF1965	0.36	-3.1
7,664	-		GFF1965	0.36	+0.6
7,664	-		GFF1965	0.36	-0.8
7,664	-		GFF1965	0.36	+0.8
7,664	-		GFF1965	0.36	-0.1
7,664	-		GFF1965	0.36	-2.7
7,664	-		GFF1965	0.36	-2.8
7,664	-		GFF1965	0.36	-3.5
7,664	-		GFF1965	0.36	-2.6
7,664	-		GFF1965	0.36	+0.5
7,664	-		GFF1965	0.36	+0.2
7,978	+		GFF1965	0.72	-0.5
7,978	+		GFF1965	0.72	-0.2
7,978	+		GFF1965	0.72	+1.0
7,978	+		GFF1965	0.72	+0.2
7,978	+		GFF1965	0.72	-2.5
7,979	-		GFF1965	0.72	+0.2
7,979	-		GFF1965	0.72	-1.7
7,979	-		GFF1965	0.72	-0.1
7,979	-		GFF1965	0.72	-2.1
7,979	-		GFF1965	0.72	+1.4
7,979	-		GFF1965	0.72	-2.1
7,979	-		GFF1965	0.72	+0.8
7,979	-		GFF1965	0.72	+1.2
7,979	-		GFF1965	0.72	+0.8
7,979	-		GFF1965	0.72	+0.1
7,979	-		GFF1965	0.72	-1.8
7,979	-		GFF1965	0.72	+0.4
8,348	-				+1.2
8,499	+		GFF1966	0.17	-0.1
8,499	+		GFF1966	0.17	+2.2
8,499	+		GFF1966	0.17	-0.1
8,500	-		GFF1966	0.17	-1.0
8,500	-		GFF1966	0.17	+0.6
8,500	-		GFF1966	0.17	+1.3
8,500	-		GFF1966	0.17	+2.2
8,500	-		GFF1966	0.17	+2.2
8,565	+		GFF1966	0.22	+0.4
8,565	+		GFF1966	0.22	+0.2
8,565	+		GFF1966	0.22	+0.2
8,565	+		GFF1966	0.22	-1.0
8,565	+		GFF1966	0.22	-0.1
8,565	+		GFF1966	0.22	+0.6
8,565	+		GFF1966	0.22	-0.8
8,565	+		GFF1966	0.22	-1.1
8,566	-		GFF1966	0.22	+0.6
8,566	-		GFF1966	0.22	+1.2
8,566	-		GFF1966	0.22	+1.2
8,566	-		GFF1966	0.22	+4.5
8,568	+		GFF1966	0.22	+1.2
8,568	+		GFF1966	0.22	-1.8
8,568	+		GFF1966	0.22	-1.4
8,568	+		GFF1966	0.22	+1.2
8,568	+		GFF1966	0.22	-0.6
8,568	+		GFF1966	0.22	-1.1
8,569	-		GFF1966	0.22	+2.2
8,569	-		GFF1966	0.22	+1.2
8,569	-		GFF1966	0.22	-0.4
8,569	-		GFF1966	0.22	+2.2
8,569	-		GFF1966	0.22	+1.2
8,709	+		GFF1966	0.31	+2.2
8,709	+		GFF1966	0.31	-0.8
8,760	+		GFF1966	0.34	+2.2
8,761	-		GFF1966	0.34	+1.2
9,132	+		GFF1966	0.58	+2.2
9,133	-		GFF1966	0.58	-2.2
9,133	-		GFF1966	0.58	-0.1
9,133	-		GFF1966	0.58	+2.5
9,133	-		GFF1966	0.58	+1.2
9,189	+		GFF1966	0.61	-1.1
9,189	+		GFF1966	0.61	-0.8
9,189	+		GFF1966	0.61	+1.2
9,189	+		GFF1966	0.61	+0.2
9,189	+		GFF1966	0.61	+0.6
9,189	+		GFF1966	0.61	-1.3
9,190	-		GFF1966	0.61	+2.2
9,190	-		GFF1966	0.61	+0.6
9,190	-		GFF1966	0.61	-1.0
9,190	-		GFF1966	0.61	+2.2
9,190	-		GFF1966	0.61	+0.6
9,234	+		GFF1966	0.64	+0.2
9,234	+		GFF1966	0.64	+2.2
9,234	+		GFF1966	0.64	-1.0
9,234	+		GFF1966	0.64	-0.1
9,234	+		GFF1966	0.64	+0.6
9,241	-		GFF1966	0.64	-0.4
9,241	-		GFF1966	0.64	+2.2
9,400	-		GFF1966	0.75	-1.3
9,693	+				+0.6
9,694	-				+0.2
9,694	-				+2.2
10,171	+		GFF1967	0.27	-0.0
10,171	+		GFF1967	0.27	-0.2
10,171	+		GFF1967	0.27	+0.9
10,171	+		GFF1967	0.27	-0.7
10,171	+		GFF1967	0.27	-1.3
10,172	-		GFF1967	0.27	+0.7
10,172	-		GFF1967	0.27	+3.0
10,690	+		GFF1967	0.64	-2.3
10,691	-		GFF1967	0.64	-1.3
10,691	-		GFF1967	0.64	+1.8
10,753	+		GFF1967	0.69	+0.8