Strain Fitness in Variovorax sp. SCN45 around GFF1775

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1773 and GFF1774 are separated by 128 nucleotidesGFF1774 and GFF1775 overlap by 4 nucleotidesGFF1775 and GFF1776 are separated by 28 nucleotidesGFF1776 and GFF1777 are separated by 24 nucleotides GFF1773 - D-amino acid dehydrogenase (EC 1.4.99.6), at 435,330 to 436,631 GFF1773 GFF1774 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 436,760 to 437,227 GFF1774 GFF1775 - no description, at 437,224 to 437,718 GFF1775 GFF1776 - OsmC-like protein Pfl_1628, at 437,747 to 438,148 GFF1776 GFF1777 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 438,173 to 439,354 GFF1777 Position (kb) 437 438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 436.243 kb on + strand, within GFF1773at 436.243 kb on + strand, within GFF1773at 436.243 kb on + strand, within GFF1773at 436.244 kb on - strand, within GFF1773at 436.244 kb on - strand, within GFF1773at 436.291 kb on + strand, within GFF1773at 436.292 kb on - strand, within GFF1773at 436.292 kb on - strand, within GFF1773at 436.330 kb on + strand, within GFF1773at 436.330 kb on + strand, within GFF1773at 436.331 kb on - strand, within GFF1773at 436.480 kb on + strand, within GFF1773at 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.579 kb on + strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.580 kb on - strandat 436.582 kb on + strandat 436.582 kb on + strandat 436.582 kb on + strandat 436.582 kb on + strandat 436.582 kb on + strandat 436.583 kb on - strandat 436.583 kb on - strandat 436.583 kb on - strandat 436.668 kb on + strandat 436.669 kb on - strandat 436.819 kb on + strand, within GFF1774at 436.819 kb on + strand, within GFF1774at 437.078 kb on + strand, within GFF1774at 437.079 kb on - strand, within GFF1774at 437.079 kb on - strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.390 kb on - strand, within GFF1775at 437.621 kb on - strand, within GFF1775at 437.621 kb on - strand, within GFF1775at 437.695 kb on + strandat 437.695 kb on + strandat 437.696 kb on - strandat 437.696 kb on - strandat 437.879 kb on + strand, within GFF1776at 437.880 kb on - strand, within GFF1776at 437.924 kb on + strand, within GFF1776at 437.924 kb on + strand, within GFF1776at 437.925 kb on - strand, within GFF1776at 437.925 kb on - strand, within GFF1776at 438.267 kb on + strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.288 kb on + strandat 438.288 kb on + strandat 438.289 kb on - strandat 438.363 kb on + strand, within GFF1777at 438.363 kb on + strand, within GFF1777at 438.363 kb on + strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.385 kb on - strand, within GFF1777at 438.385 kb on - strand, within GFF1777at 438.405 kb on + strand, within GFF1777at 438.537 kb on + strand, within GFF1777at 438.549 kb on + strand, within GFF1777at 438.549 kb on + strand, within GFF1777at 438.550 kb on - strand, within GFF1777

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
436,243 + GFF1773 0.70 -2.1
436,243 + GFF1773 0.70 -2.4
436,243 + GFF1773 0.70 -1.3
436,244 - GFF1773 0.70 -1.9
436,244 - GFF1773 0.70 -0.1
436,291 + GFF1773 0.74 -1.0
436,292 - GFF1773 0.74 -0.8
436,292 - GFF1773 0.74 -1.6
436,330 + GFF1773 0.77 -3.7
436,330 + GFF1773 0.77 -2.5
436,331 - GFF1773 0.77 -2.1
436,480 + GFF1773 0.88 -0.4
436,579 + -1.1
436,579 + -2.5
436,579 + -1.5
436,579 + -0.1
436,579 + -2.9
436,579 + -3.7
436,579 + -0.4
436,579 + -2.9
436,579 + -3.0
436,579 + -0.4
436,580 - -0.6
436,580 - -1.4
436,580 - -1.5
436,580 - -0.6
436,580 - -0.7
436,580 - -2.1
436,580 - -0.4
436,580 - +2.2
436,580 - -2.5
436,582 + +1.3
436,582 + -1.3
436,582 + -0.9
436,582 + -0.0
436,582 + -0.1
436,583 - -2.1
436,583 - -3.8
436,583 - -1.4
436,668 + +0.4
436,669 - +2.2
436,819 + GFF1774 0.13 -1.0
436,819 + GFF1774 0.13 -1.5
437,078 + GFF1774 0.68 -0.5
437,079 - GFF1774 0.68 -3.1
437,079 - GFF1774 0.68 -1.6
437,174 + GFF1774 0.88 -2.8
437,174 + GFF1774 0.88 -3.7
437,174 + GFF1774 0.88 -3.8
437,174 + GFF1774 0.88 -3.0
437,174 + GFF1774 0.88 -0.1
437,174 + GFF1774 0.88 +0.2
437,174 + GFF1774 0.88 -0.7
437,174 + GFF1774 0.88 -1.5
437,175 - GFF1774 0.89 +0.1
437,175 - GFF1774 0.89 -1.4
437,175 - GFF1774 0.89 +1.2
437,175 - GFF1774 0.89 -1.6
437,175 - GFF1774 0.89 +0.7
437,175 - GFF1774 0.89 -1.5
437,175 - GFF1774 0.89 +1.5
437,390 - GFF1775 0.34 -2.6
437,621 - GFF1775 0.80 -3.0
437,621 - GFF1775 0.80 -1.0
437,695 + -1.1
437,695 + -2.6
437,696 - -0.3
437,696 - -1.6
437,879 + GFF1776 0.33 +2.0
437,880 - GFF1776 0.33 +2.0
437,924 + GFF1776 0.44 +1.2
437,924 + GFF1776 0.44 -0.6
437,925 - GFF1776 0.44 -1.1
437,925 - GFF1776 0.44 -0.9
438,267 + -0.7
438,268 - -0.7
438,268 - +0.3
438,268 - -0.2
438,268 - +0.3
438,288 + +1.2
438,288 + -1.3
438,289 - -1.4
438,363 + GFF1777 0.16 +1.1
438,363 + GFF1777 0.16 -0.1
438,363 + GFF1777 0.16 -1.3
438,364 - GFF1777 0.16 -0.7
438,364 - GFF1777 0.16 +0.8
438,364 - GFF1777 0.16 +0.1
438,371 + GFF1777 0.17 -0.4
438,371 + GFF1777 0.17 -0.1
438,371 + GFF1777 0.17 -1.1
438,371 + GFF1777 0.17 -1.1
438,371 + GFF1777 0.17 +0.6
438,371 + GFF1777 0.17 +1.2
438,372 - GFF1777 0.17 -1.1
438,372 - GFF1777 0.17 -1.4
438,372 - GFF1777 0.17 -2.4
438,385 - GFF1777 0.18 +4.4
438,385 - GFF1777 0.18 +0.3
438,405 + GFF1777 0.20 -0.6
438,537 + GFF1777 0.31 +2.7
438,549 + GFF1777 0.32 -0.1
438,549 + GFF1777 0.32 +1.5
438,550 - GFF1777 0.32 +0.1

Or see this region's nucleotide sequence