Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF172 and GFF173 are separated by 350 nucleotides GFF173 and GFF174 are separated by 100 nucleotides GFF174 and GFF175 are separated by 36 nucleotides
GFF172 - hypothetical protein, at 202,380 to 204,242
GFF172
GFF173 - Hexuronate utilization operon transcriptional repressor ExuR, at 204,593 to 205,327
GFF173
GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258
GFF174
GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960
GFF175
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.439 kb on + strand at 204.439 kb on + strand at 204.462 kb on + strand at 204.462 kb on + strand at 204.463 kb on - strand at 204.463 kb on - strand at 204.501 kb on + strand at 204.502 kb on - strand at 204.502 kb on - strand at 204.530 kb on + strand at 204.537 kb on - strand at 204.542 kb on + strand at 204.556 kb on + strand at 204.556 kb on + strand at 204.557 kb on - strand at 204.557 kb on - strand at 204.653 kb on + strand at 204.653 kb on + strand at 204.653 kb on + strand at 204.654 kb on - strand at 204.654 kb on - strand at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.884 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.410 kb on + strand at 205.410 kb on + strand at 205.410 kb on + strand at 205.411 kb on - strand at 205.411 kb on - strand at 205.411 kb on - strand at 205.806 kb on + strand, within GFF174 at 205.806 kb on + strand, within GFF174 at 205.807 kb on - strand, within GFF174 at 205.807 kb on - strand, within GFF174 at 205.807 kb on - strand, within GFF174 at 205.908 kb on + strand, within GFF174 at 205.908 kb on + strand, within GFF174 at 205.909 kb on - strand, within GFF174 at 205.909 kb on - strand, within GFF174 at 205.909 kb on - strand, within GFF174 at 206.176 kb on - strand at 206.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 204,064 + -1.8 204,064 + -0.2 204,064 + +0.3 204,064 + -1.8 204,064 + +1.0 204,064 + +0.2 204,064 + -0.6 204,064 + -2.6 204,064 + +0.6 204,065 - +0.2 204,065 - -1.2 204,065 - +0.8 204,065 - +0.7 204,065 - -0.7 204,065 - -2.1 204,065 - +0.4 204,264 + +0.9 204,264 + +1.9 204,264 + -0.7 204,264 + -2.0 204,264 + -0.4 204,264 + +0.4 204,264 + -1.8 204,265 - -3.0 204,265 - -0.2 204,265 - +0.8 204,265 - +0.6 204,439 + -0.3 204,439 + -2.3 204,462 + +0.2 204,462 + -0.8 204,463 - -1.6 204,463 - -2.0 204,501 + +0.2 204,502 - -0.6 204,502 - +0.4 204,530 + -0.3 204,537 - -1.1 204,542 + -0.4 204,556 + +0.1 204,556 + +0.5 204,557 - +2.2 204,557 - -3.0 204,653 + +0.4 204,653 + +0.6 204,653 + +0.3 204,654 - -0.5 204,654 - +1.4 204,836 + GFF173 0.33 -0.3 204,836 + GFF173 0.33 -3.0 204,836 + GFF173 0.33 +0.8 204,836 + GFF173 0.33 -1.3 204,836 + GFF173 0.33 -3.6 204,836 + GFF173 0.33 -1.9 204,836 + GFF173 0.33 +0.1 204,836 + GFF173 0.33 -1.5 204,836 + GFF173 0.33 +0.1 204,836 + GFF173 0.33 -1.5 204,836 + GFF173 0.33 +1.7 204,836 + GFF173 0.33 -1.1 204,836 + GFF173 0.33 -1.3 204,836 + GFF173 0.33 -1.2 204,836 + GFF173 0.33 -2.3 204,836 + GFF173 0.33 +2.2 204,836 + GFF173 0.33 +0.0 204,836 + GFF173 0.33 +1.3 204,836 + GFF173 0.33 +1.7 204,837 - GFF173 0.33 +0.1 204,837 - GFF173 0.33 -0.3 204,837 - GFF173 0.33 -1.6 204,837 - GFF173 0.33 +1.5 204,837 - GFF173 0.33 -1.6 204,837 - GFF173 0.33 +0.7 204,837 - GFF173 0.33 -0.1 204,837 - GFF173 0.33 +1.8 204,837 - GFF173 0.33 +0.7 204,837 - GFF173 0.33 -0.1 204,837 - GFF173 0.33 +1.0 204,884 + GFF173 0.40 -0.4 205,001 + GFF173 0.56 +0.5 205,001 + GFF173 0.56 +0.7 205,001 + GFF173 0.56 -0.1 205,001 + GFF173 0.56 -0.4 205,001 + GFF173 0.56 -1.8 205,001 + GFF173 0.56 -2.3 205,001 + GFF173 0.56 +0.9 205,002 - GFF173 0.56 +1.2 205,002 - GFF173 0.56 -2.1 205,002 - GFF173 0.56 -0.3 205,002 - GFF173 0.56 -1.1 205,410 + -1.1 205,410 + -0.3 205,410 + +1.1 205,411 - +0.7 205,411 - +1.1 205,411 - -0.2 205,806 + GFF174 0.45 -0.8 205,806 + GFF174 0.45 -0.3 205,807 - GFF174 0.46 +0.0 205,807 - GFF174 0.46 +0.1 205,807 - GFF174 0.46 -1.8 205,908 + GFF174 0.58 -0.7 205,908 + GFF174 0.58 -1.0 205,909 - GFF174 0.58 -2.0 205,909 - GFF174 0.58 +1.3 205,909 - GFF174 0.58 -0.5 206,176 - +1.3 206,176 - +0.6
Or see this region's nucleotide sequence