Strain Fitness in Variovorax sp. SCN45 around GFF1704

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1703 and GFF1704 overlap by 8 nucleotidesGFF1704 and GFF1705 are separated by 24 nucleotides GFF1703 - DNA for 3-methylaspartate ammonia-lyase, glutamate mutase, at 349,332 to 350,723 GFF1703 GFF1704 - FIG00901292: hypothetical protein, at 350,716 to 351,024 GFF1704 GFF1705 - ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) / C-terminal AAA-associated domain, at 351,049 to 352,410 GFF1705 Position (kb) 350 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 350.095 kb on - strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.161 kb on - strand, within GFF1703at 350.220 kb on + strand, within GFF1703at 350.220 kb on + strand, within GFF1703at 350.221 kb on - strand, within GFF1703at 350.343 kb on + strand, within GFF1703at 350.583 kb on + strand, within GFF1703at 350.584 kb on - strandat 350.680 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.722 kb on - strandat 350.722 kb on - strandat 350.821 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 351.022 kb on + strandat 351.022 kb on + strandat 351.022 kb on + strandat 351.023 kb on - strandat 351.023 kb on - strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.146 kb on + strandat 351.248 kb on + strand, within GFF1705at 351.248 kb on + strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.996 kb on - strand, within GFF1705at 351.996 kb on - strand, within GFF1705at 351.996 kb on - strand, within GFF1705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
349,827 + GFF1703 0.36 -1.1
349,827 + GFF1703 0.36 +0.9
349,827 + GFF1703 0.36 -1.5
349,827 + GFF1703 0.36 -2.1
349,827 + GFF1703 0.36 +0.1
349,827 + GFF1703 0.36 +0.0
349,827 + GFF1703 0.36 -1.1
349,827 + GFF1703 0.36 -2.1
349,827 + GFF1703 0.36 +0.6
349,828 - GFF1703 0.36 +0.6
349,828 - GFF1703 0.36 -0.4
349,828 - GFF1703 0.36 -1.6
349,828 - GFF1703 0.36 +0.0
349,828 - GFF1703 0.36 -0.1
349,828 - GFF1703 0.36 -0.1
349,828 - GFF1703 0.36 +1.7
349,828 - GFF1703 0.36 +2.2
350,095 - GFF1703 0.55 -1.2
350,160 + GFF1703 0.59 +0.2
350,160 + GFF1703 0.59 +1.2
350,160 + GFF1703 0.59 -0.4
350,161 - GFF1703 0.60 +2.2
350,220 + GFF1703 0.64 +1.4
350,220 + GFF1703 0.64 -2.0
350,221 - GFF1703 0.64 -1.8
350,343 + GFF1703 0.73 +0.7
350,583 + GFF1703 0.90 -1.5
350,584 - -1.4
350,680 + +1.3
350,721 + -2.1
350,721 + -0.5
350,721 + -0.7
350,721 + +1.4
350,722 - -1.8
350,722 - -0.8
350,821 + GFF1704 0.34 -1.3
350,992 + GFF1704 0.89 -3.4
350,992 + GFF1704 0.89 -1.1
350,992 + GFF1704 0.89 -1.1
350,992 + GFF1704 0.89 +2.1
350,992 + GFF1704 0.89 -0.3
350,992 + GFF1704 0.89 +0.5
350,992 + GFF1704 0.89 +2.2
350,992 + GFF1704 0.89 -0.2
350,993 - GFF1704 0.90 +1.0
350,993 - GFF1704 0.90 +0.6
350,993 - GFF1704 0.90 +3.1
350,993 - GFF1704 0.90 -1.1
350,993 - GFF1704 0.90 +1.5
350,993 - GFF1704 0.90 -1.8
350,993 - GFF1704 0.90 -0.9
350,993 - GFF1704 0.90 -1.5
351,022 + +0.6
351,022 + -1.4
351,022 + -0.1
351,023 - +0.5
351,023 - +0.6
351,128 + -1.7
351,128 + -0.4
351,128 + -3.4
351,128 + +0.8
351,128 + -1.1
351,128 + +1.6
351,129 - +0.6
351,129 - -0.2
351,129 - +1.0
351,129 - -1.4
351,129 - -2.3
351,146 + -0.0
351,248 + GFF1705 0.15 -0.4
351,248 + GFF1705 0.15 +0.0
351,249 - GFF1705 0.15 -0.4
351,249 - GFF1705 0.15 -2.0
351,249 - GFF1705 0.15 -0.9
351,470 + GFF1705 0.31 -0.6
351,470 + GFF1705 0.31 -1.6
351,470 + GFF1705 0.31 -1.0
351,470 + GFF1705 0.31 -1.1
351,470 + GFF1705 0.31 -0.6
351,471 - GFF1705 0.31 +0.3
351,471 - GFF1705 0.31 -4.3
351,471 - GFF1705 0.31 -2.5
351,471 - GFF1705 0.31 +0.7
351,471 - GFF1705 0.31 +0.6
351,995 + GFF1705 0.69 +0.9
351,995 + GFF1705 0.69 +1.0
351,995 + GFF1705 0.69 -2.6
351,996 - GFF1705 0.70 -1.1
351,996 - GFF1705 0.70 -2.3
351,996 - GFF1705 0.70 +0.4

Or see this region's nucleotide sequence