Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1641 and GFF1642 are separated by 63 nucleotides GFF1642 and GFF1643 are separated by 4 nucleotides GFF1643 and GFF1644 are separated by 205 nucleotides GFF1644 and GFF1645 are separated by 25 nucleotides
GFF1641 - Polyketide synthase modules and related proteins, at 278,275 to 283,587
GFF1641
GFF1642 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 283,651 to 284,391
GFF1642
GFF1643 - MbtH-like NRPS chaperone, at 284,396 to 284,644
GFF1643
GFF1644 - hypothetical protein, at 284,850 to 285,110
GFF1644
GFF1645 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 285,136 to 285,666
GFF1645
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.875 kb on + strand, within GFF1641 at 282.876 kb on - strand, within GFF1641 at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.086 kb on - strand at 283.086 kb on - strand at 283.340 kb on + strand at 283.367 kb on + strand at 283.367 kb on + strand at 283.367 kb on + strand at 283.368 kb on - strand at 283.368 kb on - strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.638 kb on + strand at 284.638 kb on + strand at 284.638 kb on + strand at 284.714 kb on + strand at 284.715 kb on - strand at 284.742 kb on + strand at 284.742 kb on + strand at 284.742 kb on + strand at 284.951 kb on - strand, within GFF1644
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 282,875 + GFF1641 0.87 +1.2 282,876 - GFF1641 0.87 +0.5 283,085 + +0.9 283,085 + +0.1 283,085 + -1.9 283,085 + -1.0 283,085 + -0.8 283,085 + -3.7 283,086 - -0.2 283,086 - +1.1 283,340 + +2.0 283,367 + -2.2 283,367 + +1.2 283,367 + -0.5 283,368 - +1.4 283,368 - +0.3 284,333 + -2.0 284,333 + +0.4 284,333 + +1.9 284,333 + -0.1 284,333 + +1.2 284,333 + -2.3 284,333 + -0.2 284,334 - +2.2 284,334 - -0.2 284,334 - +0.1 284,334 - -1.7 284,334 - +0.4 284,334 - -0.6 284,334 - -0.8 284,486 + GFF1643 0.36 +0.3 284,486 + GFF1643 0.36 -2.2 284,486 + GFF1643 0.36 -2.6 284,486 + GFF1643 0.36 +0.1 284,486 + GFF1643 0.36 -0.5 284,487 - GFF1643 0.37 +0.6 284,487 - GFF1643 0.37 -0.4 284,490 + GFF1643 0.38 -0.7 284,490 + GFF1643 0.38 -0.9 284,491 - GFF1643 0.38 -1.8 284,491 - GFF1643 0.38 +0.6 284,577 + GFF1643 0.73 +0.2 284,577 + GFF1643 0.73 +0.3 284,577 + GFF1643 0.73 -2.3 284,638 + -0.0 284,638 + -2.6 284,638 + -0.9 284,714 + -0.8 284,715 - -0.4 284,742 + +0.6 284,742 + +0.1 284,742 + +0.0 284,951 - GFF1644 0.39 +0.3
Or see this region's nucleotide sequence