Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1188 and GFF1189 are separated by 21 nucleotides GFF1189 and GFF1190 overlap by 4 nucleotides GFF1190 and GFF1191 are separated by 927 nucleotides
GFF1188 - Thiazole synthase (EC 2.8.1.10), at 505,726 to 506,541
GFF1188
GFF1189 - Sulfur carrier protein ThiS, at 506,563 to 506,760
GFF1189
GFF1190 - Glycine oxidase ThiO (EC 1.4.3.19), at 506,757 to 507,848
GFF1190
GFF1191 - Predicted hydroxymethylpyrimidine transporter CytX, at 508,776 to 510,110
GFF1191
Position (kb) 506
507
508 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.628 kb on - strand, within GFF1189 at 506.998 kb on + strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 507.109 kb on + strand, within GFF1190 at 507.109 kb on + strand, within GFF1190 at 507.110 kb on - strand, within GFF1190 at 508.007 kb on + strand at 508.008 kb on - strand at 508.098 kb on - strand at 508.290 kb on - strand at 508.715 kb on + strand at 508.715 kb on + strand at 508.715 kb on + strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 506,118 - GFF1188 0.48 -3.4 506,118 - GFF1188 0.48 -0.6 506,118 - GFF1188 0.48 -1.2 506,118 - GFF1188 0.48 -4.1 506,196 - GFF1188 0.58 -2.6 506,196 - GFF1188 0.58 -0.2 506,196 - GFF1188 0.58 -1.7 506,628 - GFF1189 0.33 -2.9 506,998 + GFF1190 0.22 -2.5 506,999 - GFF1190 0.22 -3.7 506,999 - GFF1190 0.22 -1.0 506,999 - GFF1190 0.22 -2.4 506,999 - GFF1190 0.22 -3.0 507,109 + GFF1190 0.32 -0.8 507,109 + GFF1190 0.32 -2.9 507,110 - GFF1190 0.32 +1.9 508,007 + -0.6 508,008 - -3.0 508,098 - -3.8 508,290 - -2.4 508,715 + -0.2 508,715 + -5.0 508,715 + -2.9 508,716 - -3.3 508,716 - -0.2 508,716 - -0.6 508,716 - -1.9 508,716 - -1.9 508,716 - -1.2 508,716 - -4.1 508,716 - -4.4 508,716 - -1.8
Or see this region's nucleotide sequence