Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1140 and GFF1141 are separated by 7 nucleotides GFF1141 and GFF1142 overlap by 1 nucleotides GFF1142 and GFF1143 are separated by 3 nucleotides GFF1143 and GFF1144 are separated by 38 nucleotides
GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592
GFF1140
GFF1141 - Membrane-fusion protein, at 456,600 to 457,586
GFF1141
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
GFF1143 - no description, at 459,023 to 459,760
GFF1143
GFF1144 - hypothetical protein, at 459,799 to 461,700
GFF1144
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.833 kb on + strand, within GFF1142 at 457.834 kb on - strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.167 kb on - strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 459.304 kb on + strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.777 kb on + strand at 459.777 kb on + strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.962 kb on - strand at 459.962 kb on - strand at 459.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 456,742 + GFF1141 0.14 +0.5 456,742 + GFF1141 0.14 +0.8 456,742 + GFF1141 0.14 -1.9 456,742 + GFF1141 0.14 -0.5 456,742 + GFF1141 0.14 -0.3 456,742 + GFF1141 0.14 -3.1 456,742 + GFF1141 0.14 -2.5 456,742 + GFF1141 0.14 -2.8 456,743 - GFF1141 0.14 -0.5 456,743 - GFF1141 0.14 +0.7 456,743 - GFF1141 0.14 -1.3 456,743 - GFF1141 0.14 -0.5 456,743 - GFF1141 0.14 -1.9 456,743 - GFF1141 0.14 +0.5 456,743 - GFF1141 0.14 -0.1 456,745 + GFF1141 0.15 -0.6 456,745 + GFF1141 0.15 +0.2 456,745 + GFF1141 0.15 +0.1 456,745 + GFF1141 0.15 -1.9 456,745 + GFF1141 0.15 -1.1 456,746 - GFF1141 0.15 -0.5 456,746 - GFF1141 0.15 -1.4 456,746 - GFF1141 0.15 -2.2 456,746 - GFF1141 0.15 -1.2 456,746 - GFF1141 0.15 -1.7 457,078 + GFF1141 0.48 -0.2 457,078 + GFF1141 0.48 +0.0 457,078 + GFF1141 0.48 -0.1 457,078 + GFF1141 0.48 -0.4 457,078 + GFF1141 0.48 -2.6 457,078 + GFF1141 0.48 -3.1 457,079 - GFF1141 0.49 -2.0 457,079 - GFF1141 0.49 -2.7 457,079 - GFF1141 0.49 -0.3 457,079 - GFF1141 0.49 -2.7 457,617 + -0.6 457,617 + -0.7 457,617 + -2.1 457,617 + -2.5 457,617 + +0.8 457,618 - +0.0 457,618 - -4.0 457,618 - -2.5 457,677 + +0.2 457,677 + -1.6 457,677 + +0.7 457,678 - +1.8 457,678 - -1.0 457,678 - -3.1 457,678 - -1.3 457,678 - +0.4 457,678 - -0.2 457,833 + GFF1142 0.17 +0.2 457,834 - GFF1142 0.17 -1.0 457,977 + GFF1142 0.27 -0.5 457,977 + GFF1142 0.27 -0.1 457,977 + GFF1142 0.27 +0.3 457,977 + GFF1142 0.27 -0.2 457,978 - GFF1142 0.27 +0.3 457,978 - GFF1142 0.27 -0.2 457,978 - GFF1142 0.27 -3.5 457,978 - GFF1142 0.27 -1.2 458,166 + GFF1142 0.40 -3.1 458,166 + GFF1142 0.40 -1.2 458,167 - GFF1142 0.41 +1.6 458,313 + GFF1142 0.51 -0.3 458,313 + GFF1142 0.51 +0.5 458,314 - GFF1142 0.51 -0.7 458,314 - GFF1142 0.51 +1.6 458,314 - GFF1142 0.51 -2.2 458,457 + GFF1142 0.61 -2.8 458,457 + GFF1142 0.61 +1.3 458,571 + GFF1142 0.69 -3.4 458,571 + GFF1142 0.69 -0.9 458,571 + GFF1142 0.69 -2.6 458,571 + GFF1142 0.69 -0.2 458,571 + GFF1142 0.69 -1.9 458,571 + GFF1142 0.69 -0.9 458,571 + GFF1142 0.69 -4.2 458,571 + GFF1142 0.69 +0.3 458,571 + GFF1142 0.69 -0.6 458,572 - GFF1142 0.69 -1.8 458,572 - GFF1142 0.69 -3.1 458,572 - GFF1142 0.69 -0.7 458,572 - GFF1142 0.69 +0.3 458,572 - GFF1142 0.69 -0.2 458,572 - GFF1142 0.69 -1.7 458,572 - GFF1142 0.69 -2.1 458,572 - GFF1142 0.69 -2.4 458,572 - GFF1142 0.69 -0.8 458,572 - GFF1142 0.69 -1.1 458,572 - GFF1142 0.69 +0.2 458,572 - GFF1142 0.69 -0.5 458,572 - GFF1142 0.69 +0.1 458,631 + GFF1142 0.73 +0.2 458,631 + GFF1142 0.73 +1.3 458,631 + GFF1142 0.73 +0.2 458,631 + GFF1142 0.73 +0.8 458,631 + GFF1142 0.73 -2.8 458,632 - GFF1142 0.73 -3.3 458,632 - GFF1142 0.73 -1.7 458,632 - GFF1142 0.73 -1.5 458,632 - GFF1142 0.73 -0.8 458,632 - GFF1142 0.73 -0.6 458,632 - GFF1142 0.73 -1.1 458,632 - GFF1142 0.73 -2.1 458,757 + GFF1142 0.82 +1.0 458,757 + GFF1142 0.82 -1.9 458,757 + GFF1142 0.82 -2.7 458,757 + GFF1142 0.82 +0.1 458,757 + GFF1142 0.82 -3.9 458,757 + GFF1142 0.82 -0.2 458,757 + GFF1142 0.82 -1.0 458,757 + GFF1142 0.82 -0.8 458,757 + GFF1142 0.82 -0.3 458,757 + GFF1142 0.82 +0.2 458,758 - GFF1142 0.82 -3.5 458,758 - GFF1142 0.82 +1.9 458,758 - GFF1142 0.82 -1.4 458,758 - GFF1142 0.82 -0.2 458,758 - GFF1142 0.82 -0.6 458,763 + GFF1142 0.82 -0.3 458,763 + GFF1142 0.82 -1.4 458,763 + GFF1142 0.82 -2.5 458,763 + GFF1142 0.82 -0.8 458,763 + GFF1142 0.82 -2.0 458,763 + GFF1142 0.82 -2.7 458,763 + GFF1142 0.82 -0.4 458,763 + GFF1142 0.82 +0.8 458,763 + GFF1142 0.82 -1.8 458,763 + GFF1142 0.82 +0.0 458,764 - GFF1142 0.82 -0.7 458,764 - GFF1142 0.82 -1.8 458,764 - GFF1142 0.82 +0.2 458,764 - GFF1142 0.82 -1.1 459,304 + GFF1143 0.38 +2.0 459,305 - GFF1143 0.38 -2.3 459,305 - GFF1143 0.38 -0.2 459,305 - GFF1143 0.38 -0.4 459,305 - GFF1143 0.38 -2.6 459,597 + GFF1143 0.78 +0.9 459,597 + GFF1143 0.78 -0.3 459,597 + GFF1143 0.78 -0.3 459,598 - GFF1143 0.78 -1.2 459,598 - GFF1143 0.78 -0.6 459,598 - GFF1143 0.78 -1.1 459,598 - GFF1143 0.78 -3.0 459,651 + GFF1143 0.85 -0.9 459,651 + GFF1143 0.85 +0.8 459,651 + GFF1143 0.85 +0.2 459,651 + GFF1143 0.85 +1.0 459,651 + GFF1143 0.85 -0.4 459,651 + GFF1143 0.85 +1.5 459,651 + GFF1143 0.85 -0.1 459,652 - GFF1143 0.85 -0.0 459,652 - GFF1143 0.85 -2.6 459,652 - GFF1143 0.85 +2.6 459,772 + -0.8 459,772 + -1.2 459,772 + +0.4 459,772 + -0.5 459,772 + +0.2 459,772 + -1.8 459,772 + -1.2 459,772 + +0.8 459,773 - -0.9 459,773 - -1.4 459,773 - -2.4 459,773 - +0.9 459,773 - -0.6 459,773 - -3.2 459,773 - -0.5 459,773 - -2.6 459,773 - +0.6 459,773 - +0.1 459,777 + +0.3 459,777 + -0.3 459,778 - +0.2 459,778 - -1.6 459,778 - -2.6 459,778 - -0.8 459,821 + -1.0 459,821 + -0.3 459,821 + +1.2 459,822 - -2.2 459,822 - -0.9 459,822 - -1.7 459,822 - +0.2 459,822 - +0.8 459,822 - +0.5 459,835 + +0.3 459,835 + -0.5 459,835 + +0.6 459,835 + +2.3 459,835 + -1.0 459,836 - +1.0 459,836 - +0.3 459,836 - -0.4 459,836 - -1.5 459,836 - -1.1 459,836 - -2.8 459,836 - +1.2 459,961 + -0.5 459,961 + -1.8 459,961 + +1.9 459,962 - -2.2 459,962 - -0.5 459,962 - -1.7
Or see this region's nucleotide sequence