Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF925 and GFF926 are separated by 46 nucleotides GFF926 and GFF927 overlap by 4 nucleotides GFF927 and GFF928 are separated by 155 nucleotides
GFF925 - hypothetical protein, at 237,279 to 238,058
GFF925
GFF926 - Transcriptional regulator, AcrR family, at 238,105 to 238,785
GFF926
GFF927 - Acyl-CoA dehydrogenase, at 238,782 to 240,494
GFF927
GFF928 - tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91), at 240,650 to 241,630
GFF928
Position (kb) 238
239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 237.867 kb on + strand, within GFF925 at 237.867 kb on + strand, within GFF925 at 237.867 kb on + strand, within GFF925 at 237.867 kb on + strand, within GFF925 at 237.867 kb on + strand, within GFF925 at 237.868 kb on - strand, within GFF925 at 237.868 kb on - strand, within GFF925 at 237.868 kb on - strand, within GFF925 at 237.868 kb on - strand, within GFF925 at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.014 kb on + strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.015 kb on - strand at 238.111 kb on + strand at 238.112 kb on - strand at 238.112 kb on - strand at 238.261 kb on + strand, within GFF926 at 238.262 kb on - strand, within GFF926 at 238.262 kb on - strand, within GFF926 at 238.262 kb on - strand, within GFF926 at 238.262 kb on - strand, within GFF926 at 238.267 kb on + strand, within GFF926 at 238.267 kb on + strand, within GFF926 at 238.267 kb on + strand, within GFF926 at 238.268 kb on - strand, within GFF926 at 238.436 kb on - strand, within GFF926 at 238.489 kb on + strand, within GFF926 at 238.489 kb on + strand, within GFF926 at 238.514 kb on + strand, within GFF926 at 238.514 kb on + strand, within GFF926 at 238.515 kb on - strand, within GFF926 at 238.669 kb on + strand, within GFF926 at 238.669 kb on + strand, within GFF926 at 238.669 kb on + strand, within GFF926 at 238.669 kb on + strand, within GFF926 at 238.670 kb on - strand, within GFF926 at 238.830 kb on + strand at 238.830 kb on + strand at 238.830 kb on + strand at 238.831 kb on - strand at 239.181 kb on + strand, within GFF927 at 239.181 kb on + strand, within GFF927 at 239.181 kb on + strand, within GFF927 at 239.181 kb on + strand, within GFF927 at 239.182 kb on - strand, within GFF927 at 239.232 kb on + strand, within GFF927 at 239.232 kb on + strand, within GFF927 at 239.232 kb on + strand, within GFF927 at 239.233 kb on - strand, within GFF927 at 239.233 kb on - strand, within GFF927 at 239.233 kb on - strand, within GFF927 at 239.233 kb on - strand, within GFF927 at 239.233 kb on - strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.304 kb on + strand, within GFF927 at 239.305 kb on - strand, within GFF927 at 239.305 kb on - strand, within GFF927 at 239.356 kb on - strand, within GFF927 at 239.434 kb on - strand, within GFF927 at 239.458 kb on - strand, within GFF927 at 239.458 kb on - strand, within GFF927 at 239.652 kb on + strand, within GFF927 at 239.652 kb on + strand, within GFF927 at 239.652 kb on + strand, within GFF927 at 239.653 kb on - strand, within GFF927 at 239.653 kb on - strand, within GFF927 at 239.653 kb on - strand, within GFF927 at 240.561 kb on + strand at 240.562 kb on + strand at 240.563 kb on - strand at 240.563 kb on - strand at 240.563 kb on - strand at 240.563 kb on - strand at 240.563 kb on - strand at 240.563 kb on - strand at 240.628 kb on + strand at 240.632 kb on + strand at 240.636 kb on - strand at 240.637 kb on + strand at 240.637 kb on + strand at 240.637 kb on + strand at 240.638 kb on - strand at 240.638 kb on - strand at 240.638 kb on - strand at 240.638 kb on - strand at 240.643 kb on + strand at 240.643 kb on + strand at 240.643 kb on + strand at 240.643 kb on + strand at 240.643 kb on + strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.644 kb on - strand at 240.716 kb on + strand at 240.717 kb on - strand at 240.717 kb on - strand at 240.717 kb on - strand at 240.752 kb on + strand, within GFF928 at 240.752 kb on + strand, within GFF928 at 240.752 kb on + strand, within GFF928 at 240.752 kb on + strand, within GFF928 at 240.753 kb on - strand, within GFF928 at 240.753 kb on - strand, within GFF928 at 240.753 kb on - strand, within GFF928 at 240.753 kb on - strand, within GFF928 at 240.783 kb on + strand, within GFF928 at 240.784 kb on - strand, within GFF928 at 240.784 kb on - strand, within GFF928 at 240.784 kb on - strand, within GFF928 at 240.795 kb on + strand, within GFF928 at 240.795 kb on + strand, within GFF928 at 240.796 kb on - strand, within GFF928 at 240.796 kb on - strand, within GFF928 at 240.905 kb on + strand, within GFF928 at 240.905 kb on + strand, within GFF928 at 240.905 kb on + strand, within GFF928 at 240.906 kb on - strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.082 kb on + strand, within GFF928 at 241.083 kb on - strand, within GFF928 at 241.083 kb on - strand, within GFF928 at 241.083 kb on - strand, within GFF928 at 241.211 kb on + strand, within GFF928 at 241.343 kb on + strand, within GFF928 at 241.343 kb on + strand, within GFF928 at 241.343 kb on + strand, within GFF928 at 241.343 kb on + strand, within GFF928 at 241.344 kb on - strand, within GFF928 at 241.344 kb on - strand, within GFF928 at 241.385 kb on + strand, within GFF928 at 241.386 kb on - strand, within GFF928 at 241.386 kb on - strand, within GFF928 at 241.386 kb on - strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.442 kb on + strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928 at 241.443 kb on - strand, within GFF928
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 237,867 + GFF925 0.75 -0.5 237,867 + GFF925 0.75 +0.6 237,867 + GFF925 0.75 -2.3 237,867 + GFF925 0.75 -1.0 237,867 + GFF925 0.75 +0.7 237,868 - GFF925 0.76 +3.2 237,868 - GFF925 0.76 +0.3 237,868 - GFF925 0.76 -0.1 237,868 - GFF925 0.76 +0.7 238,014 + -3.0 238,014 + -0.4 238,014 + -3.5 238,014 + +0.2 238,014 + -2.0 238,014 + +0.6 238,014 + -1.1 238,014 + -0.3 238,014 + +0.4 238,014 + -0.3 238,014 + +1.0 238,014 + -1.8 238,014 + -2.6 238,014 + -1.6 238,014 + -2.2 238,014 + -1.7 238,014 + -2.5 238,014 + +1.8 238,015 - -1.4 238,015 - -2.3 238,015 - -1.1 238,015 - +0.2 238,015 - -2.1 238,015 - -3.1 238,015 - +1.2 238,015 - -0.8 238,015 - +0.7 238,015 - +0.0 238,015 - +0.7 238,015 - +0.2 238,015 - +0.8 238,111 + -3.4 238,112 - -1.3 238,112 - -0.6 238,261 + GFF926 0.23 -0.7 238,262 - GFF926 0.23 -0.2 238,262 - GFF926 0.23 -0.3 238,262 - GFF926 0.23 +0.2 238,262 - GFF926 0.23 -2.6 238,267 + GFF926 0.24 -1.1 238,267 + GFF926 0.24 -0.2 238,267 + GFF926 0.24 -2.2 238,268 - GFF926 0.24 -0.7 238,436 - GFF926 0.49 -1.3 238,489 + GFF926 0.56 -3.0 238,489 + GFF926 0.56 -1.7 238,514 + GFF926 0.60 -0.6 238,514 + GFF926 0.60 +2.8 238,515 - GFF926 0.60 -0.1 238,669 + GFF926 0.83 -2.3 238,669 + GFF926 0.83 +0.2 238,669 + GFF926 0.83 -0.3 238,669 + GFF926 0.83 +1.7 238,670 - GFF926 0.83 -1.6 238,830 + +2.5 238,830 + -1.3 238,830 + -2.7 238,831 - -2.5 239,181 + GFF927 0.23 -2.3 239,181 + GFF927 0.23 -2.4 239,181 + GFF927 0.23 -1.1 239,181 + GFF927 0.23 -1.7 239,182 - GFF927 0.23 -1.5 239,232 + GFF927 0.26 -1.1 239,232 + GFF927 0.26 -3.3 239,232 + GFF927 0.26 -3.6 239,233 - GFF927 0.26 -1.1 239,233 - GFF927 0.26 -1.8 239,233 - GFF927 0.26 -2.2 239,233 - GFF927 0.26 -1.8 239,233 - GFF927 0.26 -1.6 239,304 + GFF927 0.30 -0.3 239,304 + GFF927 0.30 -0.9 239,304 + GFF927 0.30 -0.8 239,304 + GFF927 0.30 -0.5 239,304 + GFF927 0.30 -4.2 239,304 + GFF927 0.30 -1.7 239,304 + GFF927 0.30 +1.1 239,305 - GFF927 0.31 +0.8 239,305 - GFF927 0.31 -0.7 239,356 - GFF927 0.34 -0.9 239,434 - GFF927 0.38 +1.2 239,458 - GFF927 0.39 +2.0 239,458 - GFF927 0.39 -1.8 239,652 + GFF927 0.51 +0.9 239,652 + GFF927 0.51 +0.1 239,652 + GFF927 0.51 -0.8 239,653 - GFF927 0.51 -1.7 239,653 - GFF927 0.51 +0.0 239,653 - GFF927 0.51 +1.9 240,561 + -2.3 240,562 + +1.7 240,563 - -0.2 240,563 - +1.1 240,563 - -0.3 240,563 - -0.8 240,563 - +0.5 240,563 - -2.5 240,628 + +1.0 240,632 + -2.0 240,636 - +1.7 240,637 + +1.6 240,637 + +2.3 240,637 + +3.3 240,638 - -2.5 240,638 - -0.2 240,638 - -2.9 240,638 - +1.8 240,643 + -0.3 240,643 + -0.1 240,643 + +0.2 240,643 + -0.3 240,643 + +0.5 240,644 - +0.1 240,644 - -0.3 240,644 - +1.2 240,644 - +1.2 240,644 - +0.9 240,644 - -0.3 240,644 - -0.3 240,716 + +0.7 240,717 - -0.6 240,717 - -3.0 240,717 - -1.7 240,752 + GFF928 0.10 -0.4 240,752 + GFF928 0.10 -0.2 240,752 + GFF928 0.10 -0.1 240,752 + GFF928 0.10 -1.6 240,753 - GFF928 0.10 -1.2 240,753 - GFF928 0.10 +2.1 240,753 - GFF928 0.10 +0.7 240,753 - GFF928 0.10 +1.5 240,783 + GFF928 0.14 -0.1 240,784 - GFF928 0.14 +0.7 240,784 - GFF928 0.14 -2.0 240,784 - GFF928 0.14 +1.7 240,795 + GFF928 0.15 -0.5 240,795 + GFF928 0.15 +0.2 240,796 - GFF928 0.15 -4.1 240,796 - GFF928 0.15 +0.3 240,905 + GFF928 0.26 +1.2 240,905 + GFF928 0.26 +0.2 240,905 + GFF928 0.26 -1.4 240,906 - GFF928 0.26 -1.1 241,082 + GFF928 0.44 -0.7 241,082 + GFF928 0.44 -2.1 241,082 + GFF928 0.44 -0.8 241,082 + GFF928 0.44 -0.4 241,082 + GFF928 0.44 -1.0 241,082 + GFF928 0.44 -1.1 241,082 + GFF928 0.44 -2.6 241,082 + GFF928 0.44 -2.0 241,083 - GFF928 0.44 -2.3 241,083 - GFF928 0.44 -3.1 241,083 - GFF928 0.44 +0.7 241,211 + GFF928 0.57 -1.4 241,343 + GFF928 0.71 -0.3 241,343 + GFF928 0.71 -3.6 241,343 + GFF928 0.71 -2.3 241,343 + GFF928 0.71 -1.1 241,344 - GFF928 0.71 +0.9 241,344 - GFF928 0.71 -0.1 241,385 + GFF928 0.75 -1.8 241,386 - GFF928 0.75 -2.2 241,386 - GFF928 0.75 -3.3 241,386 - GFF928 0.75 -0.3 241,442 + GFF928 0.81 -0.0 241,442 + GFF928 0.81 -1.8 241,442 + GFF928 0.81 +0.8 241,442 + GFF928 0.81 +0.4 241,442 + GFF928 0.81 +0.2 241,442 + GFF928 0.81 -0.7 241,442 + GFF928 0.81 -0.6 241,443 - GFF928 0.81 +0.5 241,443 - GFF928 0.81 +0.3 241,443 - GFF928 0.81 -0.8 241,443 - GFF928 0.81 +0.2 241,443 - GFF928 0.81 -0.6 241,443 - GFF928 0.81 +2.1 241,443 - GFF928 0.81 -1.7 241,443 - GFF928 0.81 -3.4 241,443 - GFF928 0.81 +1.5 241,443 - GFF928 0.81 -0.1
Or see this region's nucleotide sequence