Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF886 and GFF887 overlap by 4 nucleotides GFF887 and GFF888 are separated by 49 nucleotides GFF888 and GFF889 are separated by 62 nucleotides
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
GFF887 - Small uncharacterized protein Bpro_4170, at 196,696 to 197,064
GFF887
GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079
GFF888
GFF889 - FIG00349738: hypothetical protein, at 198,142 to 200,244
GFF889
Position (kb)
197
198
199 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 196.136 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.326 kb on - strand, within GFF886 at 196.565 kb on + strand at 196.565 kb on + strand at 196.565 kb on + strand at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 197.370 kb on - strand, within GFF888 at 197.567 kb on + strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.655 kb on - strand, within GFF888 at 197.841 kb on - strand, within GFF888 at 197.852 kb on + strand, within GFF888 at 197.867 kb on + strand, within GFF888 at 197.868 kb on - strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.961 kb on - strand, within GFF888 at 197.961 kb on - strand, within GFF888 at 198.078 kb on - strand at 198.078 kb on - strand at 198.078 kb on - strand at 198.307 kb on + strand at 198.307 kb on + strand at 198.308 kb on - strand at 198.308 kb on - strand at 198.368 kb on - strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.541 kb on + strand, within GFF889 at 198.601 kb on + strand, within GFF889 at 198.601 kb on + strand, within GFF889 at 198.602 kb on - strand, within GFF889 at 198.602 kb on - strand, within GFF889 at 198.712 kb on + strand, within GFF889 at 198.797 kb on - strand, within GFF889 at 198.797 kb on - strand, within GFF889 at 198.832 kb on + strand, within GFF889 at 198.833 kb on - strand, within GFF889 at 198.982 kb on + strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 199.000 kb on + strand, within GFF889
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 196,136 + GFF886 0.60 -1.4 196,271 + GFF886 0.70 -1.1 196,271 + GFF886 0.70 -0.5 196,271 + GFF886 0.70 -1.1 196,271 + GFF886 0.70 -1.0 196,271 + GFF886 0.70 -1.3 196,271 + GFF886 0.70 -1.0 196,272 - GFF886 0.70 -0.9 196,272 - GFF886 0.70 +1.3 196,326 - GFF886 0.74 +1.9 196,565 + +0.2 196,565 + -1.1 196,565 + -1.6 196,886 + GFF887 0.51 +1.5 196,886 + GFF887 0.51 -2.6 196,886 + GFF887 0.51 -0.4 196,887 - GFF887 0.52 -3.7 196,887 - GFF887 0.52 +3.0 197,370 - GFF888 0.27 -0.8 197,567 + GFF888 0.47 +3.0 197,568 - GFF888 0.47 -2.2 197,568 - GFF888 0.47 -0.8 197,654 + GFF888 0.56 -2.3 197,654 + GFF888 0.56 +0.8 197,655 - GFF888 0.56 -0.3 197,841 - GFF888 0.75 -1.2 197,852 + GFF888 0.76 -1.8 197,867 + GFF888 0.78 -1.3 197,868 - GFF888 0.78 -0.6 197,960 + GFF888 0.88 -0.3 197,960 + GFF888 0.88 -2.3 197,960 + GFF888 0.88 -0.2 197,960 + GFF888 0.88 -0.5 197,961 - GFF888 0.88 -1.5 197,961 - GFF888 0.88 -0.6 198,078 - +1.1 198,078 - -0.3 198,078 - -1.6 198,307 + -0.8 198,307 + +1.7 198,308 - +0.1 198,308 - -2.1 198,368 - GFF889 0.11 +0.2 198,478 + GFF889 0.16 -2.5 198,478 + GFF889 0.16 -1.8 198,478 + GFF889 0.16 -0.6 198,478 + GFF889 0.16 +0.7 198,479 - GFF889 0.16 -0.0 198,479 - GFF889 0.16 +1.0 198,479 - GFF889 0.16 -0.5 198,479 - GFF889 0.16 +1.3 198,541 + GFF889 0.19 +1.6 198,601 + GFF889 0.22 +1.1 198,601 + GFF889 0.22 -2.2 198,602 - GFF889 0.22 +1.3 198,602 - GFF889 0.22 +3.0 198,712 + GFF889 0.27 -2.7 198,797 - GFF889 0.31 -3.0 198,797 - GFF889 0.31 -1.1 198,832 + GFF889 0.33 -0.6 198,833 - GFF889 0.33 -1.1 198,982 + GFF889 0.40 -0.1 198,989 - GFF889 0.40 +0.7 198,989 - GFF889 0.40 +0.3 198,989 - GFF889 0.40 +1.3 198,989 - GFF889 0.40 -0.3 198,989 - GFF889 0.40 -1.8 199,000 + GFF889 0.41 +1.9
Or see this region's nucleotide sequence