Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF886 and GFF887 overlap by 4 nucleotides GFF887 and GFF888 are separated by 49 nucleotides
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
GFF887 - Small uncharacterized protein Bpro_4170, at 196,696 to 197,064
GFF887
GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079
GFF888
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 195.785 kb on + strand, within GFF886 at 195.786 kb on - strand, within GFF886 at 195.983 kb on + strand, within GFF886 at 196.002 kb on - strand, within GFF886 at 196.136 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.326 kb on - strand, within GFF886 at 196.565 kb on + strand at 196.565 kb on + strand at 196.565 kb on + strand at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 197.370 kb on - strand, within GFF888 at 197.567 kb on + strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.655 kb on - strand, within GFF888 at 197.841 kb on - strand, within GFF888 at 197.852 kb on + strand, within GFF888 at 197.867 kb on + strand, within GFF888 at 197.868 kb on - strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.961 kb on - strand, within GFF888 at 197.961 kb on - strand, within GFF888
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 195,785 + GFF886 0.36 -3.4 195,786 - GFF886 0.36 -1.3 195,983 + GFF886 0.50 +0.8 196,002 - GFF886 0.51 -0.6 196,136 + GFF886 0.60 -1.4 196,271 + GFF886 0.70 -1.1 196,271 + GFF886 0.70 -0.5 196,271 + GFF886 0.70 -1.1 196,271 + GFF886 0.70 -1.0 196,271 + GFF886 0.70 -1.3 196,271 + GFF886 0.70 -1.0 196,272 - GFF886 0.70 -0.9 196,272 - GFF886 0.70 +1.3 196,326 - GFF886 0.74 +1.9 196,565 + +0.2 196,565 + -1.1 196,565 + -1.6 196,886 + GFF887 0.51 +1.5 196,886 + GFF887 0.51 -2.6 196,886 + GFF887 0.51 -0.4 196,887 - GFF887 0.52 -3.7 196,887 - GFF887 0.52 +3.0 197,370 - GFF888 0.27 -0.8 197,567 + GFF888 0.47 +3.0 197,568 - GFF888 0.47 -2.2 197,568 - GFF888 0.47 -0.8 197,654 + GFF888 0.56 -2.3 197,654 + GFF888 0.56 +0.8 197,655 - GFF888 0.56 -0.3 197,841 - GFF888 0.75 -1.2 197,852 + GFF888 0.76 -1.8 197,867 + GFF888 0.78 -1.3 197,868 - GFF888 0.78 -0.6 197,960 + GFF888 0.88 -0.3 197,960 + GFF888 0.88 -2.3 197,960 + GFF888 0.88 -0.2 197,960 + GFF888 0.88 -0.5 197,961 - GFF888 0.88 -1.5 197,961 - GFF888 0.88 -0.6
Or see this region's nucleotide sequence