Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF761 and GFF762 are separated by 304 nucleotides GFF762 and GFF763 are separated by 5 nucleotides GFF763 and GFF764 are separated by 29 nucleotides
GFF761 - FIG00537905: hypothetical protein, at 24,679 to 26,994
GFF761
GFF762 - hypothetical protein, at 27,299 to 27,487
GFF762
GFF763 - Transporter, LysE family, at 27,493 to 28,122
GFF763
GFF764 - hypothetical protein, at 28,152 to 29,831
GFF764
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 26.930 kb on + strand at 26.930 kb on + strand at 27.021 kb on + strand at 27.021 kb on + strand at 27.021 kb on + strand at 27.021 kb on + strand at 27.022 kb on - strand at 27.022 kb on - strand at 27.080 kb on + strand at 27.081 kb on + strand at 27.081 kb on + strand at 27.081 kb on + strand at 27.114 kb on + strand at 27.114 kb on + strand at 27.114 kb on + strand at 27.115 kb on - strand at 27.115 kb on - strand at 27.115 kb on - strand at 27.115 kb on - strand at 27.115 kb on - strand at 27.115 kb on - strand at 27.278 kb on + strand at 27.278 kb on + strand at 27.278 kb on + strand at 27.279 kb on - strand at 27.279 kb on - strand at 27.279 kb on - strand at 27.279 kb on - strand at 27.279 kb on - strand at 27.407 kb on + strand, within GFF762 at 27.467 kb on + strand, within GFF762 at 27.671 kb on + strand, within GFF763 at 27.671 kb on + strand, within GFF763 at 27.672 kb on - strand, within GFF763 at 27.858 kb on - strand, within GFF763 at 27.858 kb on - strand, within GFF763 at 27.858 kb on - strand, within GFF763 at 27.858 kb on - strand, within GFF763 at 27.875 kb on + strand, within GFF763 at 27.875 kb on + strand, within GFF763 at 27.875 kb on + strand, within GFF763 at 27.875 kb on + strand, within GFF763 at 27.876 kb on - strand, within GFF763 at 28.094 kb on + strand at 28.094 kb on + strand at 28.095 kb on - strand at 28.095 kb on - strand at 28.301 kb on - strand at 28.301 kb on - strand at 28.301 kb on - strand at 28.384 kb on + strand, within GFF764 at 28.384 kb on + strand, within GFF764 at 28.384 kb on + strand, within GFF764 at 28.384 kb on + strand, within GFF764 at 28.385 kb on - strand, within GFF764 at 28.385 kb on - strand, within GFF764 at 28.385 kb on - strand, within GFF764 at 28.385 kb on - strand, within GFF764 at 28.385 kb on - strand, within GFF764 at 28.567 kb on + strand, within GFF764 at 28.568 kb on - strand, within GFF764 at 28.568 kb on - strand, within GFF764 at 28.568 kb on - strand, within GFF764 at 28.568 kb on - strand, within GFF764 at 28.568 kb on - strand, within GFF764 at 28.678 kb on + strand, within GFF764 at 28.678 kb on + strand, within GFF764 at 28.678 kb on + strand, within GFF764 at 28.678 kb on + strand, within GFF764 at 28.678 kb on + strand, within GFF764 at 28.679 kb on - strand, within GFF764 at 28.679 kb on - strand, within GFF764 at 28.679 kb on - strand, within GFF764 at 28.679 kb on - strand, within GFF764 at 28.679 kb on - strand, within GFF764 at 28.936 kb on + strand, within GFF764 at 28.936 kb on + strand, within GFF764 at 28.936 kb on + strand, within GFF764 at 28.972 kb on + strand, within GFF764 at 28.973 kb on - strand, within GFF764 at 28.973 kb on - strand, within GFF764 at 28.973 kb on - strand, within GFF764 at 29.069 kb on - strand, within GFF764
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 26,930 + -1.3 26,930 + -0.3 27,021 + -2.5 27,021 + -2.6 27,021 + -3.2 27,021 + -0.6 27,022 - +1.7 27,022 - -2.8 27,080 + -1.2 27,081 + -1.4 27,081 + +0.7 27,081 + -0.5 27,114 + -0.8 27,114 + -1.3 27,114 + -1.7 27,115 - +1.7 27,115 - -2.8 27,115 - -0.1 27,115 - -2.0 27,115 - -0.8 27,115 - -2.5 27,278 + -0.6 27,278 + -0.4 27,278 + +0.3 27,279 - -0.6 27,279 - -0.1 27,279 - +0.9 27,279 - +0.3 27,279 - -1.5 27,407 + GFF762 0.57 +1.4 27,467 + GFF762 0.89 -0.8 27,671 + GFF763 0.28 +1.3 27,671 + GFF763 0.28 +0.7 27,672 - GFF763 0.28 +0.2 27,858 - GFF763 0.58 -0.1 27,858 - GFF763 0.58 -0.8 27,858 - GFF763 0.58 -1.1 27,858 - GFF763 0.58 -0.1 27,875 + GFF763 0.61 +0.7 27,875 + GFF763 0.61 -0.5 27,875 + GFF763 0.61 +2.3 27,875 + GFF763 0.61 -2.1 27,876 - GFF763 0.61 +1.4 28,094 + +0.3 28,094 + +0.2 28,095 - -1.3 28,095 - +1.9 28,301 - -0.2 28,301 - +1.2 28,301 - -1.7 28,384 + GFF764 0.14 -1.5 28,384 + GFF764 0.14 -1.3 28,384 + GFF764 0.14 -1.8 28,384 + GFF764 0.14 +1.9 28,385 - GFF764 0.14 -0.3 28,385 - GFF764 0.14 +0.2 28,385 - GFF764 0.14 +0.7 28,385 - GFF764 0.14 +1.3 28,385 - GFF764 0.14 -0.2 28,567 + GFF764 0.25 +1.3 28,568 - GFF764 0.25 -1.6 28,568 - GFF764 0.25 +1.8 28,568 - GFF764 0.25 +3.9 28,568 - GFF764 0.25 -1.3 28,568 - GFF764 0.25 -1.6 28,678 + GFF764 0.31 +3.8 28,678 + GFF764 0.31 -0.3 28,678 + GFF764 0.31 -0.4 28,678 + GFF764 0.31 +0.9 28,678 + GFF764 0.31 -0.5 28,679 - GFF764 0.31 -2.0 28,679 - GFF764 0.31 -1.1 28,679 - GFF764 0.31 +0.2 28,679 - GFF764 0.31 +0.2 28,679 - GFF764 0.31 -0.2 28,936 + GFF764 0.47 +1.3 28,936 + GFF764 0.47 -1.7 28,936 + GFF764 0.47 -0.8 28,972 + GFF764 0.49 +0.7 28,973 - GFF764 0.49 -2.6 28,973 - GFF764 0.49 +0.3 28,973 - GFF764 0.49 +0.1 29,069 - GFF764 0.55 -3.1
Or see this region's nucleotide sequence