Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7203 and GFF7204 are separated by 176 nucleotides GFF7204 and GFF7205 are separated by 28 nucleotides GFF7205 and GFF7206 are separated by 225 nucleotides GFF7206 and GFF7207 are separated by 106 nucleotides GFF7207 and GFF7208 overlap by 14 nucleotides
GFF7203 - Two-component transcriptional response regulator, LuxR family, at 21,150 to 22,622
GFF7203
GFF7204 - no description, at 22,799 to 23,386
GFF7204
GFF7205 - no description, at 23,415 to 23,612
GFF7205
GFF7206 - no description, at 23,838 to 24,164
GFF7206
GFF7207 - no description, at 24,271 to 24,546
GFF7207
GFF7208 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 24,533 to 25,306
GFF7208
Position (kb) 23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 22.853 kb on + strand at 22.854 kb on - strand at 22.854 kb on - strand at 22.856 kb on + strand at 22.857 kb on - strand at 22.857 kb on - strand at 23.309 kb on + strand, within GFF7204 at 23.309 kb on + strand, within GFF7204 at 23.309 kb on + strand, within GFF7204 at 23.309 kb on + strand, within GFF7204 at 23.310 kb on - strand, within GFF7204 at 23.425 kb on + strand at 23.426 kb on - strand at 23.426 kb on - strand at 23.426 kb on - strand at 23.426 kb on - strand at 23.426 kb on - strand at 23.700 kb on + strand at 23.701 kb on - strand at 23.701 kb on - strand at 23.735 kb on + strand at 23.735 kb on + strand at 23.736 kb on - strand at 23.960 kb on + strand, within GFF7206 at 23.968 kb on - strand, within GFF7206 at 24.440 kb on + strand, within GFF7207 at 24.440 kb on + strand, within GFF7207 at 24.440 kb on + strand, within GFF7207 at 24.440 kb on + strand, within GFF7207 at 24.440 kb on + strand, within GFF7207 at 24.441 kb on - strand, within GFF7207 at 24.441 kb on - strand, within GFF7207 at 24.441 kb on - strand, within GFF7207 at 24.441 kb on - strand, within GFF7207 at 24.585 kb on + strand at 24.585 kb on + strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.586 kb on - strand at 24.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 22,853 + -1.6 22,854 - -2.7 22,854 - +0.3 22,856 + -2.1 22,857 - -0.3 22,857 - +0.3 23,309 + GFF7204 0.87 -0.9 23,309 + GFF7204 0.87 +0.1 23,309 + GFF7204 0.87 +1.2 23,309 + GFF7204 0.87 -0.2 23,310 - GFF7204 0.87 -1.8 23,425 + -1.7 23,426 - -2.4 23,426 - -0.0 23,426 - -1.1 23,426 - +0.5 23,426 - -0.4 23,700 + +1.5 23,701 - +1.1 23,701 - -1.9 23,735 + +1.0 23,735 + -2.2 23,736 - -1.2 23,960 + GFF7206 0.37 +0.5 23,968 - GFF7206 0.40 -3.1 24,440 + GFF7207 0.61 +2.8 24,440 + GFF7207 0.61 -1.4 24,440 + GFF7207 0.61 -0.7 24,440 + GFF7207 0.61 +1.0 24,440 + GFF7207 0.61 -1.6 24,441 - GFF7207 0.62 +0.0 24,441 - GFF7207 0.62 -1.8 24,441 - GFF7207 0.62 +2.9 24,441 - GFF7207 0.62 -0.3 24,585 + -2.1 24,585 + -1.1 24,585 + -1.4 24,586 - +0.9 24,586 - -0.5 24,586 - -0.4
Or see this region's nucleotide sequence