Strain Fitness in Variovorax sp. SCN45 around GFF719

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF718 and GFF719 are separated by 8 nucleotidesGFF719 and GFF720 are separated by 15 nucleotidesGFF720 and GFF721 overlap by 4 nucleotidesGFF721 and GFF722 overlap by 4 nucleotides GFF718 - AraC-type DNA-binding domain-containing proteins, at 776,571 to 777,587 GFF718 GFF719 - no description, at 777,596 to 778,591 GFF719 GFF720 - no description, at 778,607 to 778,771 GFF720 GFF721 - O-acetyl-ADP-ribose deacetylase, at 778,768 to 779,274 GFF721 GFF722 - hypothetical protein, at 779,271 to 780,047 GFF722 Position (kb) 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.820 kb on + strand, within GFF718at 776.820 kb on + strand, within GFF718at 776.821 kb on - strand, within GFF718at 776.869 kb on - strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.425 kb on - strand, within GFF718at 777.630 kb on + strandat 777.631 kb on - strandat 777.883 kb on - strand, within GFF719at 777.883 kb on - strand, within GFF719at 777.906 kb on + strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.922 kb on - strand, within GFF719at 777.993 kb on + strand, within GFF719at 777.994 kb on - strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.224 kb on + strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.288 kb on - strand, within GFF719at 778.317 kb on + strand, within GFF719at 778.318 kb on - strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.736 kb on - strand, within GFF720at 778.995 kb on + strand, within GFF721at 778.995 kb on + strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.177 kb on + strand, within GFF721at 779.178 kb on - strand, within GFF721at 779.255 kb on - strandat 779.286 kb on + strandat 779.287 kb on - strandat 779.287 kb on - strandat 779.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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776,742 + GFF718 0.17 +1.2
776,742 + GFF718 0.17 -0.5
776,742 + GFF718 0.17 +0.4
776,742 + GFF718 0.17 -1.1
776,742 + GFF718 0.17 +1.9
776,742 + GFF718 0.17 +0.0
776,742 + GFF718 0.17 +1.3
776,743 - GFF718 0.17 -1.8
776,743 - GFF718 0.17 -0.8
776,743 - GFF718 0.17 +1.5
776,743 - GFF718 0.17 -1.1
776,820 + GFF718 0.24 -2.5
776,820 + GFF718 0.24 -0.1
776,821 - GFF718 0.25 -0.2
776,869 - GFF718 0.29 +1.4
777,424 + GFF718 0.84 -0.1
777,424 + GFF718 0.84 -0.5
777,424 + GFF718 0.84 +0.4
777,425 - GFF718 0.84 +0.1
777,630 + -1.8
777,631 - -1.9
777,883 - GFF719 0.29 +0.8
777,883 - GFF719 0.29 +0.5
777,906 + GFF719 0.31 -1.3
777,907 - GFF719 0.31 +1.9
777,907 - GFF719 0.31 +0.7
777,907 - GFF719 0.31 -0.1
777,907 - GFF719 0.31 -0.1
777,907 - GFF719 0.31 -1.9
777,922 - GFF719 0.33 +1.0
777,993 + GFF719 0.40 +1.5
777,994 - GFF719 0.40 -2.7
778,074 + GFF719 0.48 -3.2
778,074 + GFF719 0.48 -1.5
778,074 + GFF719 0.48 -3.4
778,074 + GFF719 0.48 -0.8
778,074 + GFF719 0.48 -2.5
778,074 + GFF719 0.48 +1.9
778,074 + GFF719 0.48 +0.7
778,074 + GFF719 0.48 +0.1
778,075 - GFF719 0.48 -0.1
778,075 - GFF719 0.48 -0.8
778,075 - GFF719 0.48 +0.6
778,075 - GFF719 0.48 +2.0
778,075 - GFF719 0.48 -1.6
778,075 - GFF719 0.48 -1.9
778,075 - GFF719 0.48 -1.3
778,075 - GFF719 0.48 +1.4
778,075 - GFF719 0.48 -0.8
778,075 - GFF719 0.48 -2.4
778,143 + GFF719 0.55 -1.8
778,143 + GFF719 0.55 -1.3
778,146 + GFF719 0.55 -2.1
778,146 + GFF719 0.55 -0.8
778,146 + GFF719 0.55 -1.8
778,146 + GFF719 0.55 -1.6
778,146 + GFF719 0.55 -3.4
778,147 - GFF719 0.55 +0.7
778,147 - GFF719 0.55 -2.6
778,147 - GFF719 0.55 -1.3
778,224 + GFF719 0.63 +0.6
778,225 - GFF719 0.63 -2.9
778,225 - GFF719 0.63 -2.3
778,225 - GFF719 0.63 -1.7
778,225 - GFF719 0.63 -1.1
778,263 + GFF719 0.67 +0.4
778,263 + GFF719 0.67 -2.6
778,264 - GFF719 0.67 -2.1
778,264 - GFF719 0.67 +0.5
778,288 - GFF719 0.69 -3.0
778,317 + GFF719 0.72 -0.1
778,318 - GFF719 0.72 -0.5
778,479 + GFF719 0.89 +0.2
778,479 + GFF719 0.89 -1.1
778,480 - GFF719 0.89 -2.1
778,480 - GFF719 0.89 -2.4
778,480 - GFF719 0.89 -1.3
778,668 + GFF720 0.37 -0.7
778,668 + GFF720 0.37 -0.2
778,668 + GFF720 0.37 +1.6
778,668 + GFF720 0.37 -0.8
778,735 + GFF720 0.78 -2.5
778,735 + GFF720 0.78 -1.3
778,735 + GFF720 0.78 -0.5
778,736 - GFF720 0.78 -0.5
778,995 + GFF721 0.45 +0.8
778,995 + GFF721 0.45 +0.7
778,996 - GFF721 0.45 +0.8
778,996 - GFF721 0.45 +0.5
778,996 - GFF721 0.45 +1.1
778,996 - GFF721 0.45 +1.5
779,131 + GFF721 0.72 -2.5
779,131 + GFF721 0.72 -2.4
779,131 + GFF721 0.72 +0.1
779,131 + GFF721 0.72 +2.2
779,131 + GFF721 0.72 +0.2
779,131 + GFF721 0.72 +0.4
779,131 + GFF721 0.72 -2.4
779,131 + GFF721 0.72 -1.3
779,132 - GFF721 0.72 -0.5
779,132 - GFF721 0.72 +0.3
779,132 - GFF721 0.72 -1.7
779,132 - GFF721 0.72 -1.5
779,132 - GFF721 0.72 +2.3
779,132 - GFF721 0.72 +2.5
779,132 - GFF721 0.72 -0.4
779,132 - GFF721 0.72 -1.5
779,132 - GFF721 0.72 +0.5
779,132 - GFF721 0.72 +0.1
779,132 - GFF721 0.72 +1.5
779,132 - GFF721 0.72 -0.0
779,177 + GFF721 0.81 +0.1
779,178 - GFF721 0.81 +0.7
779,255 - +1.3
779,286 + +0.1
779,287 - +1.5
779,287 - +0.7
779,319 + -0.1

Or see this region's nucleotide sequence