Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF715 and GFF716 overlap by 4 nucleotides GFF716 and GFF717 are separated by 28 nucleotides GFF717 and GFF718 are separated by 142 nucleotides
GFF715 - hypothetical protein, at 773,615 to 774,958
GFF715
GFF716 - no description, at 774,955 to 775,608
GFF716
GFF717 - Enoyl-CoA hydratase (EC 4.2.1.17), at 775,637 to 776,428
GFF717
GFF718 - AraC-type DNA-binding domain-containing proteins, at 776,571 to 777,587
GFF718
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.890 kb on + strand at 774.890 kb on + strand at 774.890 kb on + strand at 774.890 kb on + strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.954 kb on + strand at 774.955 kb on - strand at 775.039 kb on + strand, within GFF716 at 775.081 kb on + strand, within GFF716 at 775.082 kb on - strand, within GFF716 at 775.138 kb on + strand, within GFF716 at 775.138 kb on + strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.348 kb on + strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.430 kb on - strand, within GFF716 at 775.439 kb on - strand, within GFF716 at 776.046 kb on + strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.446 kb on + strand at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.820 kb on + strand, within GFF718 at 776.820 kb on + strand, within GFF718 at 776.821 kb on - strand, within GFF718 at 776.869 kb on - strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.425 kb on - strand, within GFF718
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 774,665 + GFF715 0.78 -1.6 774,665 + GFF715 0.78 -0.5 774,665 + GFF715 0.78 -3.1 774,665 + GFF715 0.78 -0.1 774,665 + GFF715 0.78 -2.1 774,665 + GFF715 0.78 +0.4 774,665 + GFF715 0.78 +1.1 774,665 + GFF715 0.78 +0.5 774,666 - GFF715 0.78 -0.2 774,666 - GFF715 0.78 -2.3 774,666 - GFF715 0.78 -1.3 774,666 - GFF715 0.78 +1.7 774,666 - GFF715 0.78 -0.5 774,890 + -1.6 774,890 + +1.3 774,890 + +1.0 774,890 + +1.8 774,891 - -0.1 774,891 - +0.0 774,891 - +1.3 774,891 - +0.3 774,954 + +1.5 774,955 - -1.1 775,039 + GFF716 0.13 -1.0 775,081 + GFF716 0.19 -2.6 775,082 - GFF716 0.19 -0.4 775,138 + GFF716 0.28 -0.1 775,138 + GFF716 0.28 -2.4 775,139 - GFF716 0.28 -1.5 775,139 - GFF716 0.28 -2.2 775,139 - GFF716 0.28 +0.2 775,348 + GFF716 0.60 -0.5 775,349 - GFF716 0.60 +0.0 775,349 - GFF716 0.60 -0.8 775,349 - GFF716 0.60 -1.1 775,349 - GFF716 0.60 -0.3 775,430 - GFF716 0.73 +2.5 775,439 - GFF716 0.74 -3.2 776,046 + GFF717 0.52 +1.5 776,047 - GFF717 0.52 -0.8 776,047 - GFF717 0.52 -0.6 776,446 + +0.1 776,742 + GFF718 0.17 +1.2 776,742 + GFF718 0.17 -0.5 776,742 + GFF718 0.17 +0.4 776,742 + GFF718 0.17 -1.1 776,742 + GFF718 0.17 +1.9 776,742 + GFF718 0.17 +0.0 776,742 + GFF718 0.17 +1.3 776,743 - GFF718 0.17 -1.8 776,743 - GFF718 0.17 -0.8 776,743 - GFF718 0.17 +1.5 776,743 - GFF718 0.17 -1.1 776,820 + GFF718 0.24 -2.5 776,820 + GFF718 0.24 -0.1 776,821 - GFF718 0.25 -0.2 776,869 - GFF718 0.29 +1.4 777,424 + GFF718 0.84 -0.1 777,424 + GFF718 0.84 -0.5 777,424 + GFF718 0.84 +0.4 777,425 - GFF718 0.84 +0.1
Or see this region's nucleotide sequence