Strain Fitness in Variovorax sp. SCN45 around GFF7062

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
20,379	+		GFF7060	0.49	-0.2
20,379	+		GFF7060	0.49	-2.1
20,379	+		GFF7060	0.49	+1.0
20,379	+		GFF7060	0.49	+1.7
20,380	-		GFF7060	0.49	-3.0
20,380	-		GFF7060	0.49	+0.2
20,380	-		GFF7060	0.49	-1.0
20,444	+		GFF7060	0.56	-1.4
20,444	+		GFF7060	0.56	-4.4
20,445	-		GFF7060	0.56	-1.4
20,445	-		GFF7060	0.56	-4.0
20,448	+		GFF7060	0.56	+0.8
20,448	+		GFF7060	0.56	-1.6
20,449	-		GFF7060	0.56	+0.7
20,449	-		GFF7060	0.56	-3.2
20,449	-		GFF7060	0.56	-1.7
20,449	-		GFF7060	0.56	-0.7
20,449	-		GFF7060	0.56	-2.7
20,640	+		GFF7060	0.75	+0.7
20,640	+		GFF7060	0.75	+0.6
20,641	-		GFF7060	0.75	-2.5
20,641	-		GFF7060	0.75	-1.5
20,641	-		GFF7060	0.75	-0.8
20,641	-		GFF7060	0.75	-1.2
20,641	-		GFF7060	0.75	-1.2
20,835	+				-0.2
20,836	-				+0.1
20,836	-				-0.8
20,883	+				-1.2
20,883	+				-2.7
20,883	+				-2.2
20,883	+				+2.0
20,884	-				-1.3
21,186	+		GFF7061	0.84	-1.2
21,313	+				-1.0
21,340	+				-3.3
21,340	+				+0.9
21,341	-				+0.4
21,341	-				-1.2
21,378	-				-1.3
21,378	-				+0.7
21,545	-		GFF7062	0.29	+0.7
21,562	+		GFF7062	0.31	+0.2
21,563	-		GFF7062	0.31	-2.3
21,563	-		GFF7062	0.31	-1.7
21,563	-		GFF7062	0.31	-3.3
21,563	-		GFF7062	0.31	-3.4
21,778	+		GFF7062	0.64	-2.7
21,779	-		GFF7062	0.64	-3.4
21,922	+		GFF7062	0.86	-2.5
21,922	+		GFF7062	0.86	-0.9
21,922	+		GFF7062	0.86	-3.5
21,922	+		GFF7062	0.86	-1.6
21,923	-		GFF7062	0.86	-1.9
21,943	+		GFF7062	0.89	-0.6
21,943	+		GFF7062	0.89	-0.7
21,943	+		GFF7062	0.89	-2.0
21,944	-		GFF7062	0.89	+0.1
21,944	-		GFF7062	0.89	+0.2
22,301	+		GFF7063	0.85	+2.4
22,302	-		GFF7063	0.85	+0.7
22,302	-		GFF7063	0.85	-0.8
22,388	+				+1.7
22,388	+				-3.0
22,388	+				+1.1
22,474	+				+0.8
22,474	+				+0.2
22,474	+				-1.2
22,474	+				-1.3
22,474	+				-3.7
22,475	-				+1.2
22,475	-				-0.2
22,475	-				-1.3
22,475	-				+1.3
22,475	-				+0.2
22,475	-				-0.6
22,475	-				+0.1
22,507	+				-1.2
22,507	+				-3.9
22,507	+				-2.8
22,507	+				+1.1
22,508	-				+1.9
22,508	-				+0.9
22,508	-				+1.6
22,508	-				-0.8
22,513	+				+0.1
22,513	+				-0.8
22,513	+				+0.0
22,513	+				+0.1
22,513	+				+2.8
22,513	+				-2.0
22,513	+				+2.1
22,514	-				-0.3
22,514	-				+1.1
22,514	-				-1.9
22,514	-				-2.3
22,644	+				-3.2
22,645	-				+1.7
22,778	+		GFF7064	0.14	-2.5
22,908	-		GFF7064	0.22	-0.0
22,967	+		GFF7064	0.26	-3.5
22,967	+		GFF7064	0.26	-2.3
22,967	+		GFF7064	0.26	-1.0
22,967	+		GFF7064	0.26	-0.6
22,967	+		GFF7064	0.26	-4.0
22,968	-		GFF7064	0.26	-2.9
22,968	-		GFF7064	0.26	-2.9
22,968	-		GFF7064	0.26	-0.3
22,968	-		GFF7064	0.26	+1.8
23,003	+		GFF7064	0.29	-1.7
23,003	+		GFF7064	0.29	-2.9
23,003	+		GFF7064	0.29	-0.7
23,003	+		GFF7064	0.29	-1.5
23,003	+		GFF7064	0.29	+0.1
23,003	+		GFF7064	0.29	-2.5
23,004	-		GFF7064	0.29	-2.0
23,004	-		GFF7064	0.29	-2.7
23,004	-		GFF7064	0.29	-0.8