Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7046 and GFF7047 are separated by 102 nucleotides GFF7047 and GFF7048 are separated by 2 nucleotides GFF7048 and GFF7049 are separated by 27 nucleotides
GFF7046 - FIG00854755: hypothetical protein, at 7,210 to 8,406
GFF7046
GFF7047 - hypothetical protein, at 8,509 to 8,781
GFF7047
GFF7048 - hypothetical protein, at 8,784 to 9,611
GFF7048
GFF7049 - hypothetical protein, at 9,639 to 10,094
GFF7049
Position (kb) 8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.700 kb on + strand, within GFF7046 at 7.700 kb on + strand, within GFF7046 at 7.700 kb on + strand, within GFF7046 at 7.700 kb on + strand, within GFF7046 at 7.700 kb on + strand, within GFF7046 at 7.700 kb on + strand, within GFF7046 at 7.701 kb on - strand, within GFF7046 at 7.701 kb on - strand, within GFF7046 at 7.701 kb on - strand, within GFF7046 at 7.701 kb on - strand, within GFF7046 at 7.701 kb on - strand, within GFF7046 at 7.736 kb on + strand, within GFF7046 at 7.736 kb on + strand, within GFF7046 at 7.736 kb on + strand, within GFF7046 at 7.736 kb on + strand, within GFF7046 at 7.737 kb on - strand, within GFF7046 at 8.441 kb on + strand at 8.656 kb on + strand, within GFF7047 at 8.656 kb on + strand, within GFF7047 at 8.656 kb on + strand, within GFF7047 at 8.657 kb on - strand, within GFF7047 at 8.743 kb on + strand, within GFF7047 at 8.756 kb on - strand at 8.779 kb on + strand at 8.779 kb on + strand at 8.779 kb on + strand at 8.779 kb on + strand at 8.780 kb on - strand at 9.213 kb on + strand, within GFF7048 at 9.214 kb on - strand, within GFF7048 at 9.404 kb on + strand, within GFF7048 at 9.404 kb on + strand, within GFF7048 at 9.404 kb on + strand, within GFF7048 at 9.405 kb on - strand, within GFF7048 at 9.405 kb on - strand, within GFF7048 at 9.405 kb on - strand, within GFF7048 at 9.440 kb on + strand, within GFF7048 at 9.609 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 7,700 + GFF7046 0.41 +0.2 7,700 + GFF7046 0.41 -1.7 7,700 + GFF7046 0.41 -2.4 7,700 + GFF7046 0.41 -2.7 7,700 + GFF7046 0.41 -0.3 7,700 + GFF7046 0.41 +0.1 7,701 - GFF7046 0.41 -1.2 7,701 - GFF7046 0.41 -1.0 7,701 - GFF7046 0.41 -1.6 7,701 - GFF7046 0.41 -2.5 7,701 - GFF7046 0.41 -2.4 7,736 + GFF7046 0.44 +0.3 7,736 + GFF7046 0.44 +0.7 7,736 + GFF7046 0.44 +0.9 7,736 + GFF7046 0.44 -2.3 7,737 - GFF7046 0.44 +0.1 8,441 + -0.9 8,656 + GFF7047 0.54 -0.1 8,656 + GFF7047 0.54 -0.3 8,656 + GFF7047 0.54 +2.0 8,657 - GFF7047 0.54 +0.7 8,743 + GFF7047 0.86 +0.2 8,756 - -1.8 8,779 + -0.1 8,779 + -3.6 8,779 + -1.6 8,779 + -1.2 8,780 - -1.7 9,213 + GFF7048 0.52 -3.0 9,214 - GFF7048 0.52 +1.0 9,404 + GFF7048 0.75 +0.5 9,404 + GFF7048 0.75 +0.7 9,404 + GFF7048 0.75 -2.0 9,405 - GFF7048 0.75 +1.1 9,405 - GFF7048 0.75 -3.0 9,405 - GFF7048 0.75 +0.2 9,440 + GFF7048 0.79 -2.0 9,609 + +0.2
Or see this region's nucleotide sequence