Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7040 and GFF7041 overlap by 4 nucleotides GFF7041 and GFF7042 are separated by 87 nucleotides GFF7042 and GFF7043 are separated by 9 nucleotides GFF7043 and GFF7044 are separated by 79 nucleotides
GFF7040 - FIG00361340: hypothetical protein, at 4,231 to 4,512
GFF7040
GFF7041 - hypothetical protein, at 4,509 to 4,658
GFF7041
GFF7042 - Acetyltransferase, GNAT family, at 4,746 to 5,264
GFF7042
GFF7043 - Putative transmembrane protein, at 5,274 to 5,957
GFF7043
GFF7044 - Inner membrane protein YedI, at 6,037 to 6,945
GFF7044
Position (kb) 5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.667 kb on - strand at 4.677 kb on + strand at 4.678 kb on - strand at 4.717 kb on + strand at 4.718 kb on - strand at 4.830 kb on + strand, within GFF7042 at 4.830 kb on + strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.912 kb on - strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.029 kb on - strand, within GFF7042 at 5.572 kb on - strand, within GFF7043 at 5.701 kb on - strand, within GFF7043 at 5.817 kb on - strand, within GFF7043 at 5.817 kb on - strand, within GFF7043 at 6.595 kb on + strand, within GFF7044 at 6.596 kb on - strand, within GFF7044 at 6.640 kb on + strand, within GFF7044 at 6.640 kb on + strand, within GFF7044 at 6.641 kb on - strand, within GFF7044
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 4,289 + GFF7040 0.21 -1.7 4,289 + GFF7040 0.21 -1.3 4,289 + GFF7040 0.21 +0.7 4,289 + GFF7040 0.21 -1.4 4,289 + GFF7040 0.21 -0.3 4,289 + GFF7040 0.21 -0.5 4,290 - GFF7040 0.21 +0.3 4,290 - GFF7040 0.21 -2.0 4,412 + GFF7040 0.64 -0.9 4,412 + GFF7040 0.64 -0.2 4,412 + GFF7040 0.64 +1.1 4,412 + GFF7040 0.64 -0.1 4,412 + GFF7040 0.64 +0.4 4,412 + GFF7040 0.64 -0.1 4,413 - GFF7040 0.65 +0.1 4,413 - GFF7040 0.65 +0.1 4,667 - +1.7 4,677 + +1.0 4,678 - -1.2 4,717 + -0.3 4,718 - -1.2 4,830 + GFF7042 0.16 +0.7 4,830 + GFF7042 0.16 +2.0 4,831 - GFF7042 0.16 -1.3 4,831 - GFF7042 0.16 -0.9 4,911 + GFF7042 0.32 -1.3 4,911 + GFF7042 0.32 -0.9 4,911 + GFF7042 0.32 -2.0 4,912 - GFF7042 0.32 -3.0 5,028 + GFF7042 0.54 -1.4 5,028 + GFF7042 0.54 -3.6 5,028 + GFF7042 0.54 -0.3 5,028 + GFF7042 0.54 -4.2 5,028 + GFF7042 0.54 -3.0 5,028 + GFF7042 0.54 -0.5 5,029 - GFF7042 0.55 -0.5 5,572 - GFF7043 0.44 -1.6 5,701 - GFF7043 0.62 +0.8 5,817 - GFF7043 0.79 -3.0 5,817 - GFF7043 0.79 -0.3 6,595 + GFF7044 0.61 -2.9 6,596 - GFF7044 0.61 -1.5 6,640 + GFF7044 0.66 -0.7 6,640 + GFF7044 0.66 +3.2 6,641 - GFF7044 0.66 -1.7
Or see this region's nucleotide sequence