Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7033 and GFF7034 overlap by 4 nucleotides GFF7034 and GFF7035 are separated by 143 nucleotides
GFF7033 - protein of unknown function DUF427, at 207 to 491
GFF7033
GFF7034 - FIG00538743: hypothetical protein, at 488 to 1,243
GFF7034
GFF7035 - UspA, at 1,387 to 1,827
GFF7035
Position (kb) 0
1 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 0.098 kb on - strand at 0.098 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.143 kb on - strand at 0.276 kb on + strand, within GFF7033 at 0.276 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.361 kb on - strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.560 kb on + strand at 0.560 kb on + strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 98 - +0.6 98 - -0.7 102 - -2.3 102 - -0.7 102 - -2.1 143 - -1.5 276 + GFF7033 0.24 -1.2 276 + GFF7033 0.24 -0.0 360 + GFF7033 0.54 +0.1 360 + GFF7033 0.54 +0.8 360 + GFF7033 0.54 -3.2 360 + GFF7033 0.54 -1.2 361 - GFF7033 0.54 +1.0 363 + GFF7033 0.55 -0.2 363 + GFF7033 0.55 -0.3 363 + GFF7033 0.55 +0.7 363 + GFF7033 0.55 -3.4 363 + GFF7033 0.55 -0.8 364 - GFF7033 0.55 +0.7 364 - GFF7033 0.55 -1.3 364 - GFF7033 0.55 -4.3 408 + GFF7033 0.71 +0.8 408 + GFF7033 0.71 +0.4 409 - GFF7033 0.71 -2.3 409 - GFF7033 0.71 -0.7 411 + GFF7033 0.72 -1.5 411 + GFF7033 0.72 -1.5 411 + GFF7033 0.72 -2.3 411 + GFF7033 0.72 -1.1 411 + GFF7033 0.72 -1.6 411 + GFF7033 0.72 -0.4 411 + GFF7033 0.72 -0.6 411 + GFF7033 0.72 +0.0 412 - GFF7033 0.72 -0.1 412 - GFF7033 0.72 -0.7 412 - GFF7033 0.72 -0.3 412 - GFF7033 0.72 +0.9 412 - GFF7033 0.72 +2.7 412 - GFF7033 0.72 -0.8 560 + -1.8 560 + -1.9 561 - +0.2 561 - -1.7 561 - -2.8 779 + GFF7034 0.38 -0.5 779 + GFF7034 0.38 +0.8 779 + GFF7034 0.38 -2.4 780 - GFF7034 0.39 +0.3 780 - GFF7034 0.39 +0.0 780 - GFF7034 0.39 +0.2 780 - GFF7034 0.39 -0.0 917 + GFF7034 0.57 +0.3 917 + GFF7034 0.57 -0.3 917 + GFF7034 0.57 +0.7 918 - GFF7034 0.57 +0.1 918 - GFF7034 0.57 +1.0 1,297 + -0.3 1,297 + -1.3 1,297 + -0.7 1,297 + +0.0 1,297 + +0.1 1,297 + -0.3 1,297 + -1.7 1,297 + -0.7 1,297 + -0.4 1,297 + +1.7 1,298 - +0.3
Or see this region's nucleotide sequence