Strain Fitness in Variovorax sp. SCN45 around GFF7028

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
42,702	+				-0.4
42,703	-				-1.6
42,703	-				-0.5
43,265	+				+0.5
43,266	-				+2.1
43,275	+				-3.0
43,278	+				-1.1
43,278	+				-0.3
43,278	+				+0.2
43,278	+				-0.5
43,278	+				+0.7
43,279	-				-0.8
43,279	-				-1.1
43,279	-				-0.2
43,413	+		GFF7027	0.29	-2.9
43,413	+		GFF7027	0.29	-2.2
43,413	+		GFF7027	0.29	-1.0
43,414	-		GFF7027	0.29	-0.3
43,414	-		GFF7027	0.29	-0.8
43,656	-				-1.3
43,656	-				-0.5
43,656	-				+1.1
43,656	-				+0.7
43,736	+		GFF7028	0.18	+0.1
43,736	+		GFF7028	0.18	-1.0
43,736	+		GFF7028	0.18	+0.8
43,737	-		GFF7028	0.19	-2.4
43,811	+		GFF7028	0.35	+1.0
43,811	+		GFF7028	0.35	-0.3
43,811	+		GFF7028	0.35	+2.0
43,811	+		GFF7028	0.35	-1.0
43,811	+		GFF7028	0.35	-0.3
43,811	+		GFF7028	0.35	-0.9
43,812	-		GFF7028	0.36	-2.4
43,812	-		GFF7028	0.36	-3.6
43,812	-		GFF7028	0.36	+0.0
43,812	-		GFF7028	0.36	-1.0
43,812	-		GFF7028	0.36	-0.2
44,039	+		GFF7028	0.87	+0.8
44,039	+		GFF7028	0.87	+2.0
44,039	+		GFF7028	0.87	-0.6
44,040	-		GFF7028	0.87	+0.3
44,040	-		GFF7028	0.87	-0.3
44,040	-		GFF7028	0.87	-1.3
44,040	-		GFF7028	0.87	-1.4
44,040	-		GFF7028	0.87	-1.9
44,093	+				-1.4
44,093	+				-1.5
44,093	+				+0.7
44,093	+				-0.8
44,093	+				-0.4
44,093	+				-0.8
44,093	+				-0.4
44,094	-				-2.3
44,094	-				-2.3
44,094	-				-2.9
44,110	+				-0.5
44,110	+				+0.4
44,110	+				+1.0
44,110	+				-0.3
44,110	+				-0.2
44,110	+				-0.4
44,110	+				+0.2
44,110	+				-1.0
44,110	+				-2.0
44,110	+				+2.0
44,110	+				-0.8
44,110	+				+0.0
44,111	+				+0.9
44,111	-				+0.3
44,111	-				-4.0
44,111	-				-3.2
44,111	-				-1.0
44,111	-				-0.9
44,111	-				-2.4
44,111	-				+0.6
44,111	-				+0.5
44,111	-				+0.3
44,111	-				-0.1
44,111	-				+1.3
44,350	+				-0.4
44,350	+				+2.3
44,351	-				-0.3
44,351	-				+0.2
44,358	+				-0.7
44,358	+				-1.4
44,358	+				+1.7
44,358	+				-0.5
44,358	+				-3.5
44,358	+				+0.5
44,358	+				-2.0
44,358	+				-2.3
44,359	-				-0.6
44,359	-				+0.2
44,359	-				-1.9
44,359	-				-1.9
44,359	-				-2.6
44,422	+				-1.8
44,423	-				-0.6
44,423	-				-0.8
44,423	-				-1.5
44,423	-				-3.3
44,423	-				+1.7
44,423	-				+0.1
44,455	+				-1.5
44,455	+				+0.1
44,455	+				+2.1
44,455	+				-1.0
44,455	+				-1.5
44,455	+				-1.1
44,455	+				-3.6
44,455	+				+0.2
44,456	-				-0.0
44,456	-				-2.0
44,456	-				-0.5
44,456	-				-4.4
44,456	-				-0.3
44,456	-				-0.3
44,456	-				+1.5
44,456	-				-3.2
44,456	-				-1.5
44,456	-				+1.6
44,456	-				+0.0
44,456	-				-3.2
44,456	-				+1.0
44,456	-				-3.0
44,463	-				+0.7
44,463	-				+1.2
44,475	+				-4.3
44,475	+				-1.1
44,475	+				-2.7
44,476	-				-3.0
44,476	-				-3.2
44,476	-				-1.1
44,476	-				-1.9
44,476	-				-1.7
44,476	-				+1.0
44,476	-				-3.7
44,545	+				+1.8
44,545	+				+0.3
44,545	+				-2.7
44,546	-				-1.8
44,546	-				+2.5
44,546	-				-0.6
44,549	+				-1.4
44,549	+				+2.7
44,549	+				+0.5
44,549	+				+1.3
44,549	+				-1.3
44,549	+				-3.4
44,549	+				+0.1
44,549	+				-0.8
44,549	+				-0.3
44,549	+				+1.2
44,549	+				-2.0
44,549	+				+1.0
44,549	+				-0.6
44,550	-				-3.7
44,550	-				-2.0
44,550	-				-2.1
44,550	-				+0.5
44,550	-				+0.8
44,550	-				-0.7
44,550	-				-0.2
44,550	-				+0.2
44,550	-				+0.9
44,550	-				-0.3
44,550	-				-0.6
44,550	-				+1.2
44,550	-				-0.5
44,550	-				+2.0
44,550	-				-2.9
44,550	-				+0.0
44,550	-				+0.4
44,550	-				+1.0
44,550	-				+1.2
44,550	-				+0.6
44,550	-				-2.9
44,550	-				+1.4
44,550	-				+0.7
44,576	+				-2.7
44,577	-				-2.4
44,586	+				-1.3
44,587	-				-0.6
44,614	+				-2.1
44,614	+				-1.4
44,614	+				-0.8
44,614	+				-0.3
44,615	-				-1.9
44,615	-				+0.5
44,615	-				-1.8
44,615	-				-2.7
44,615	-				-0.9
44,642	+				-1.1
44,642	+				+0.3
44,642	+				-1.2
44,642	+				-2.5
44,643	-				+0.0
44,643	-				-1.4
44,643	-				+1.5
44,643	-				+0.3
44,643	-				-0.5
44,643	-				+0.9
44,643	-				-2.1
44,643	-				+1.3
44,742	+				+0.6
44,742	+				+1.2
44,742	+				-0.1
44,742	+				+0.9
44,742	+				-2.0
44,742	+				+1.3
44,742	+				-1.8
44,743	-				-1.4
44,743	-				-2.4
44,743	-				-2.4
44,743	-				-2.4
44,743	-				-1.1
44,743	-				-2.0
44,743	-				+0.3
44,743	-				-0.7
44,745	-				+1.2
44,745	-				+0.5
44,745	-				-0.5
44,745	-				+2.5
44,800	+				+1.0
44,800	+				-1.9
44,801	-				+4.9
44,801	-				-1.5
44,806	+				-2.8
44,806	+				-0.6
44,806	+				+0.4
44,806	+				-1.3
44,806	+				+1.1
44,806	+				+1.7
44,806	+				-0.1
44,806	+				-2.5
44,807	-				-3.0
44,807	-				+1.7
44,807	-				-0.8
44,807	-				-1.0
44,807	-				-1.7
44,807	-				-1.0
44,807	-				+0.0
44,807	-				+1.3
44,821	-				+0.8
44,821	-				-0.5
44,831	+		GFF7029	0.11	+0.6
44,831	+		GFF7029	0.11	-0.5
44,831	+		GFF7029	0.11	-3.0
44,832	-		GFF7029	0.11	-2.6
44,832	-		GFF7029	0.11	-2.7
44,832	-		GFF7029	0.11	-1.8
44,832	-		GFF7029	0.11	+1.0
44,832	-		GFF7029	0.11	+0.7
44,847	+		GFF7029	0.12	-0.0
44,847	+		GFF7029	0.12	-2.7
44,848	-		GFF7029	0.12	-0.8
44,848	-		GFF7029	0.12	-0.4
44,848	-		GFF7029	0.12	-0.1
44,848	-		GFF7029	0.12	+0.9
44,848	-		GFF7029	0.12	-3.4
44,848	-		GFF7029	0.12	-3.5
45,045	-		GFF7029	0.24	-0.0
45,071	+		GFF7029	0.26	+0.5
45,071	+		GFF7029	0.26	+0.7
45,071	+		GFF7029	0.26	-0.8
45,071	+		GFF7029	0.26	-1.3
45,071	+		GFF7029	0.26	-1.1
45,072	-		GFF7029	0.26	-1.9
45,072	-		GFF7029	0.26	-0.3
45,072	-		GFF7029	0.26	-3.2
45,072	-		GFF7029	0.26	+0.0
45,072	-		GFF7029	0.26	-1.5
45,072	-		GFF7029	0.26	-1.4