Strain Fitness in Variovorax sp. SCN45 around GFF7000

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6999 and GFF7000 are separated by 8 nucleotidesGFF7000 and GFF7001 overlap by 4 nucleotides GFF6999 - Flagellar P-ring protein FlgI, at 15,141 to 16,277 GFF6999 GFF7000 - Flagellar L-ring protein FlgH, at 16,286 to 16,888 GFF7000 GFF7001 - hypothetical protein, at 16,885 to 17,895 GFF7001 Position (kb) 16 17Strain fitness (log2 ratio) -2 -1 0 1at 15.805 kb on + strand, within GFF6999at 15.847 kb on + strand, within GFF6999at 16.229 kb on + strandat 16.362 kb on + strand, within GFF7000at 16.362 kb on + strand, within GFF7000at 16.363 kb on - strand, within GFF7000at 16.719 kb on - strand, within GFF7000at 16.719 kb on - strand, within GFF7000

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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15,805 + GFF6999 0.58 -2.0
15,847 + GFF6999 0.62 +1.2
16,229 + -2.5
16,362 + GFF7000 0.13 +1.0
16,362 + GFF7000 0.13 +1.0
16,363 - GFF7000 0.13 -2.0
16,719 - GFF7000 0.72 -2.5
16,719 - GFF7000 0.72 +1.2

Or see this region's nucleotide sequence