Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6901 and GFF6902 are separated by 108 nucleotides GFF6902 and GFF6903 are separated by 92 nucleotides GFF6903 and GFF6904 are separated by 85 nucleotides
GFF6901 - no description, at 36,425 to 37,009
GFF6901
GFF6902 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 37,118 to 37,915
GFF6902
GFF6903 - Transcriptional regulator, LysR family, at 38,008 to 38,916
GFF6903
GFF6904 - Zinc-type alcohol dehydrogenase-like protein, at 39,002 to 40,012
GFF6904
Position (kb) 38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.475 kb on + strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.476 kb on - strand, within GFF6902 at 37.484 kb on + strand, within GFF6902 at 37.484 kb on + strand, within GFF6902 at 37.484 kb on + strand, within GFF6902 at 37.484 kb on + strand, within GFF6902 at 37.484 kb on + strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.485 kb on - strand, within GFF6902 at 37.649 kb on + strand, within GFF6902 at 37.649 kb on + strand, within GFF6902 at 37.649 kb on + strand, within GFF6902 at 37.650 kb on - strand, within GFF6902 at 37.650 kb on - strand, within GFF6902 at 37.650 kb on - strand, within GFF6902 at 37.862 kb on + strand at 37.862 kb on + strand at 37.862 kb on + strand at 37.862 kb on + strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 37.863 kb on - strand at 38.399 kb on + strand, within GFF6903 at 38.399 kb on + strand, within GFF6903 at 38.399 kb on + strand, within GFF6903 at 38.400 kb on - strand, within GFF6903 at 38.400 kb on - strand, within GFF6903 at 38.400 kb on - strand, within GFF6903 at 38.478 kb on - strand, within GFF6903 at 38.985 kb on - strand at 38.985 kb on - strand at 39.017 kb on + strand at 39.018 kb on - strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.021 kb on - strand at 39.021 kb on - strand at 39.021 kb on - strand at 39.263 kb on + strand, within GFF6904 at 39.264 kb on - strand, within GFF6904 at 39.264 kb on - strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.399 kb on - strand, within GFF6904 at 39.399 kb on - strand, within GFF6904 at 39.689 kb on + strand, within GFF6904 at 39.689 kb on + strand, within GFF6904
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 37,146 + +0.5 37,146 + +1.2 37,146 + +0.1 37,146 + -1.3 37,146 + -0.5 37,146 + +0.0 37,147 - +0.2 37,147 - -3.2 37,147 - +0.7 37,147 - -2.5 37,147 - -3.4 37,147 - -3.5 37,475 + GFF6902 0.45 -1.4 37,475 + GFF6902 0.45 -0.3 37,475 + GFF6902 0.45 +1.5 37,475 + GFF6902 0.45 -0.1 37,475 + GFF6902 0.45 +0.8 37,475 + GFF6902 0.45 +2.1 37,475 + GFF6902 0.45 +0.1 37,476 - GFF6902 0.45 -0.7 37,476 - GFF6902 0.45 -3.9 37,476 - GFF6902 0.45 -2.0 37,476 - GFF6902 0.45 -0.2 37,476 - GFF6902 0.45 -0.2 37,476 - GFF6902 0.45 +0.7 37,476 - GFF6902 0.45 -1.5 37,476 - GFF6902 0.45 -3.5 37,484 + GFF6902 0.46 -1.0 37,484 + GFF6902 0.46 -0.9 37,484 + GFF6902 0.46 -0.7 37,484 + GFF6902 0.46 +1.2 37,484 + GFF6902 0.46 -1.8 37,485 - GFF6902 0.46 -2.0 37,485 - GFF6902 0.46 +0.1 37,485 - GFF6902 0.46 -0.6 37,485 - GFF6902 0.46 -2.5 37,485 - GFF6902 0.46 -0.2 37,485 - GFF6902 0.46 -1.0 37,485 - GFF6902 0.46 -0.2 37,485 - GFF6902 0.46 +1.5 37,485 - GFF6902 0.46 -0.7 37,485 - GFF6902 0.46 -0.5 37,649 + GFF6902 0.67 +0.2 37,649 + GFF6902 0.67 +0.5 37,649 + GFF6902 0.67 -2.1 37,650 - GFF6902 0.67 +0.5 37,650 - GFF6902 0.67 -0.3 37,650 - GFF6902 0.67 -1.4 37,862 + +0.1 37,862 + -0.7 37,862 + -0.0 37,862 + -0.7 37,863 - -1.1 37,863 - -1.4 37,863 - -1.2 37,863 - -0.9 37,863 - +0.4 37,863 - -0.5 37,863 - -0.7 37,863 - +0.4 38,399 + GFF6903 0.43 +0.5 38,399 + GFF6903 0.43 +1.5 38,399 + GFF6903 0.43 -0.9 38,400 - GFF6903 0.43 +2.9 38,400 - GFF6903 0.43 +0.6 38,400 - GFF6903 0.43 +1.0 38,478 - GFF6903 0.52 -2.2 38,985 - -2.2 38,985 - -0.1 39,017 + -0.6 39,018 - -1.4 39,020 + +0.1 39,020 + -2.2 39,020 + +0.5 39,020 + -0.2 39,021 - +1.5 39,021 - -1.8 39,021 - -0.6 39,263 + GFF6904 0.26 +0.5 39,264 - GFF6904 0.26 +1.2 39,264 - GFF6904 0.26 +0.5 39,266 + GFF6904 0.26 -2.8 39,266 + GFF6904 0.26 -0.7 39,266 + GFF6904 0.26 +0.3 39,267 - GFF6904 0.26 -0.6 39,267 - GFF6904 0.26 +2.3 39,267 - GFF6904 0.26 -4.1 39,267 - GFF6904 0.26 -0.7 39,267 - GFF6904 0.26 +1.8 39,398 + GFF6904 0.39 -0.9 39,398 + GFF6904 0.39 +1.2 39,398 + GFF6904 0.39 -1.8 39,399 - GFF6904 0.39 +0.1 39,399 - GFF6904 0.39 -1.2 39,689 + GFF6904 0.68 -0.2 39,689 + GFF6904 0.68 +0.1
Or see this region's nucleotide sequence