Strain Fitness in Variovorax sp. SCN45 around GFF6815

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6814 and GFF6815 are separated by 156 nucleotidesGFF6815 and GFF6816 are separated by 2 nucleotides GFF6814 - NADH dehydrogenase (EC 1.6.99.3), at 59,975 to 61,330 GFF6814 GFF6815 - FIG00453801: hypothetical protein, at 61,487 to 62,746 GFF6815 GFF6816 - SAM-dependent methyltransferase, at 62,749 to 63,753 GFF6816 Position (kb) 61 62 63Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 60.517 kb on + strand, within GFF6814at 60.528 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.170 kb on + strand, within GFF6814at 61.170 kb on + strand, within GFF6814at 61.171 kb on - strand, within GFF6814at 61.342 kb on + strandat 61.343 kb on - strandat 61.343 kb on - strandat 61.455 kb on + strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.702 kb on - strand, within GFF6815at 61.702 kb on - strand, within GFF6815at 61.724 kb on + strand, within GFF6815at 61.724 kb on + strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.739 kb on + strand, within GFF6815at 61.742 kb on + strand, within GFF6815at 61.742 kb on + strand, within GFF6815at 61.743 kb on - strand, within GFF6815at 61.743 kb on - strand, within GFF6815at 61.820 kb on + strand, within GFF6815at 61.894 kb on + strand, within GFF6815at 61.894 kb on + strand, within GFF6815at 61.991 kb on + strand, within GFF6815at 61.991 kb on + strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 62.282 kb on + strand, within GFF6815at 62.282 kb on + strand, within GFF6815at 62.420 kb on + strand, within GFF6815at 62.420 kb on + strand, within GFF6815at 62.420 kb on + strand, within GFF6815at 62.420 kb on + strand, within GFF6815at 62.421 kb on - strand, within GFF6815at 62.421 kb on - strand, within GFF6815at 62.421 kb on - strand, within GFF6815at 62.421 kb on - strand, within GFF6815at 62.435 kb on + strand, within GFF6815at 62.549 kb on + strand, within GFF6815at 62.597 kb on + strand, within GFF6815at 62.597 kb on + strand, within GFF6815at 62.597 kb on + strand, within GFF6815at 62.598 kb on - strand, within GFF6815at 62.679 kb on - strandat 62.959 kb on + strand, within GFF6816at 62.959 kb on + strand, within GFF6816at 62.959 kb on + strand, within GFF6816at 62.959 kb on + strand, within GFF6816at 62.962 kb on + strand, within GFF6816at 62.963 kb on - strand, within GFF6816at 62.963 kb on - strand, within GFF6816at 62.963 kb on - strand, within GFF6816at 62.963 kb on - strand, within GFF6816at 63.211 kb on + strand, within GFF6816at 63.212 kb on - strand, within GFF6816at 63.212 kb on - strand, within GFF6816at 63.241 kb on - strand, within GFF6816at 63.241 kb on - strand, within GFF6816at 63.241 kb on - strand, within GFF6816at 63.241 kb on - strand, within GFF6816at 63.409 kb on + strand, within GFF6816at 63.409 kb on + strand, within GFF6816at 63.410 kb on - strand, within GFF6816at 63.410 kb on - strand, within GFF6816at 63.410 kb on - strand, within GFF6816at 63.622 kb on - strand, within GFF6816at 63.622 kb on - strand, within GFF6816at 63.622 kb on - strand, within GFF6816at 63.627 kb on + strand, within GFF6816at 63.627 kb on + strand, within GFF6816at 63.628 kb on - strand, within GFF6816at 63.634 kb on + strand, within GFF6816at 63.635 kb on - strand, within GFF6816at 63.642 kb on + strand, within GFF6816at 63.642 kb on + strand, within GFF6816at 63.642 kb on + strand, within GFF6816at 63.643 kb on - strand, within GFF6816at 63.643 kb on - strand, within GFF6816at 63.643 kb on - strand, within GFF6816

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
60,517 + GFF6814 0.40 +0.8
60,528 + GFF6814 0.41 -1.2
60,972 + GFF6814 0.74 -0.6
60,972 + GFF6814 0.74 -2.6
60,972 + GFF6814 0.74 -1.1
60,972 + GFF6814 0.74 -2.1
60,972 + GFF6814 0.74 +1.5
60,972 + GFF6814 0.74 -0.6
60,972 + GFF6814 0.74 -3.4
60,972 + GFF6814 0.74 -2.0
60,973 - GFF6814 0.74 -0.7
60,973 - GFF6814 0.74 -2.6
60,973 - GFF6814 0.74 -2.1
60,973 - GFF6814 0.74 -0.3
60,973 - GFF6814 0.74 +0.1
61,011 + GFF6814 0.76 +0.6
61,011 + GFF6814 0.76 +0.5
61,011 + GFF6814 0.76 -1.9
61,011 + GFF6814 0.76 +3.7
61,170 + GFF6814 0.88 -0.8
61,170 + GFF6814 0.88 -3.7
61,171 - GFF6814 0.88 -4.0
61,342 + -1.3
61,343 - -0.9
61,343 - -1.3
61,455 + +1.5
61,456 - +0.8
61,456 - -1.0
61,456 - -1.3
61,698 - GFF6815 0.17 +0.5
61,698 - GFF6815 0.17 -1.1
61,698 - GFF6815 0.17 -0.9
61,698 - GFF6815 0.17 -0.2
61,701 + GFF6815 0.17 -2.9
61,701 + GFF6815 0.17 -1.9
61,701 + GFF6815 0.17 -0.4
61,701 + GFF6815 0.17 +2.8
61,701 + GFF6815 0.17 -0.2
61,701 + GFF6815 0.17 -2.2
61,702 - GFF6815 0.17 -0.1
61,702 - GFF6815 0.17 -0.5
61,724 + GFF6815 0.19 -0.7
61,724 + GFF6815 0.19 -0.3
61,725 - GFF6815 0.19 +0.4
61,725 - GFF6815 0.19 -1.5
61,725 - GFF6815 0.19 -1.5
61,739 + GFF6815 0.20 +1.3
61,742 + GFF6815 0.20 -2.4
61,742 + GFF6815 0.20 -2.8
61,743 - GFF6815 0.20 -1.5
61,743 - GFF6815 0.20 -1.6
61,820 + GFF6815 0.26 -0.9
61,894 + GFF6815 0.32 -2.3
61,894 + GFF6815 0.32 +1.9
61,991 + GFF6815 0.40 -2.7
61,991 + GFF6815 0.40 -1.0
61,992 - GFF6815 0.40 +0.9
61,992 - GFF6815 0.40 -1.0
61,992 - GFF6815 0.40 -2.8
62,282 + GFF6815 0.63 +0.1
62,282 + GFF6815 0.63 -1.3
62,420 + GFF6815 0.74 -0.9
62,420 + GFF6815 0.74 -0.6
62,420 + GFF6815 0.74 -0.8
62,420 + GFF6815 0.74 -1.2
62,421 - GFF6815 0.74 -2.8
62,421 - GFF6815 0.74 -1.5
62,421 - GFF6815 0.74 +2.1
62,421 - GFF6815 0.74 -0.3
62,435 + GFF6815 0.75 +0.1
62,549 + GFF6815 0.84 +0.1
62,597 + GFF6815 0.88 +0.7
62,597 + GFF6815 0.88 +1.9
62,597 + GFF6815 0.88 +0.2
62,598 - GFF6815 0.88 -1.5
62,679 - +0.1
62,959 + GFF6816 0.21 -1.2
62,959 + GFF6816 0.21 -3.1
62,959 + GFF6816 0.21 +0.5
62,959 + GFF6816 0.21 +0.5
62,962 + GFF6816 0.21 -1.8
62,963 - GFF6816 0.21 +1.0
62,963 - GFF6816 0.21 -3.7
62,963 - GFF6816 0.21 +0.6
62,963 - GFF6816 0.21 -1.2
63,211 + GFF6816 0.46 -3.2
63,212 - GFF6816 0.46 +3.2
63,212 - GFF6816 0.46 -0.0
63,241 - GFF6816 0.49 -0.1
63,241 - GFF6816 0.49 +0.7
63,241 - GFF6816 0.49 +0.6
63,241 - GFF6816 0.49 +0.8
63,409 + GFF6816 0.66 -1.3
63,409 + GFF6816 0.66 +0.6
63,410 - GFF6816 0.66 +0.1
63,410 - GFF6816 0.66 -2.0
63,410 - GFF6816 0.66 +0.2
63,622 - GFF6816 0.87 -1.3
63,622 - GFF6816 0.87 -0.9
63,622 - GFF6816 0.87 -1.5
63,627 + GFF6816 0.87 -1.1
63,627 + GFF6816 0.87 +0.7
63,628 - GFF6816 0.87 -0.6
63,634 + GFF6816 0.88 +0.1
63,635 - GFF6816 0.88 -2.2
63,642 + GFF6816 0.89 +0.2
63,642 + GFF6816 0.89 -3.1
63,642 + GFF6816 0.89 +1.0
63,643 - GFF6816 0.89 -0.6
63,643 - GFF6816 0.89 +0.7
63,643 - GFF6816 0.89 -0.2

Or see this region's nucleotide sequence