Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6729 and GFF6730 overlap by 4 nucleotides GFF6730 and GFF6731 overlap by 8 nucleotides GFF6731 and GFF6732 overlap by 4 nucleotides GFF6732 and GFF6733 are separated by 4 nucleotides
GFF6729 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 40,042 to 40,755
GFF6729
GFF6730 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 40,752 to 41,504
GFF6730
GFF6731 - Nucleoside ABC transporter, permease protein 1, at 41,497 to 42,435
GFF6731
GFF6732 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 42,432 to 43,310
GFF6732
GFF6733 - hypothetical protein, at 43,315 to 44,517
GFF6733
Position (kb) 41
42
43 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 40.709 kb on + strand at 40.876 kb on + strand, within GFF6730 at 40.876 kb on + strand, within GFF6730 at 40.877 kb on - strand, within GFF6730 at 40.877 kb on - strand, within GFF6730 at 41.267 kb on - strand, within GFF6730 at 41.267 kb on - strand, within GFF6730 at 41.267 kb on - strand, within GFF6730 at 41.267 kb on - strand, within GFF6730 at 41.567 kb on + strand at 41.610 kb on - strand, within GFF6731 at 41.610 kb on - strand, within GFF6731 at 41.765 kb on + strand, within GFF6731 at 41.766 kb on - strand, within GFF6731 at 41.766 kb on - strand, within GFF6731 at 41.978 kb on + strand, within GFF6731 at 41.978 kb on + strand, within GFF6731 at 41.979 kb on - strand, within GFF6731 at 42.175 kb on + strand, within GFF6731 at 42.175 kb on + strand, within GFF6731 at 42.176 kb on - strand, within GFF6731 at 42.221 kb on + strand, within GFF6731 at 42.221 kb on + strand, within GFF6731 at 42.222 kb on - strand, within GFF6731 at 42.222 kb on - strand, within GFF6731 at 42.311 kb on + strand, within GFF6731 at 42.312 kb on - strand, within GFF6731 at 42.490 kb on + strand at 42.490 kb on + strand at 42.491 kb on - strand at 42.523 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.662 kb on - strand, within GFF6732 at 43.219 kb on + strand, within GFF6732 at 43.253 kb on - strand at 43.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 40,709 + -2.2 40,876 + GFF6730 0.16 +0.4 40,876 + GFF6730 0.16 -1.0 40,877 - GFF6730 0.17 +0.7 40,877 - GFF6730 0.17 -0.4 41,267 - GFF6730 0.68 -1.7 41,267 - GFF6730 0.68 -0.6 41,267 - GFF6730 0.68 -2.1 41,267 - GFF6730 0.68 -0.3 41,567 + -0.1 41,610 - GFF6731 0.12 +1.0 41,610 - GFF6731 0.12 +1.6 41,765 + GFF6731 0.29 -1.2 41,766 - GFF6731 0.29 -2.5 41,766 - GFF6731 0.29 +0.3 41,978 + GFF6731 0.51 +0.9 41,978 + GFF6731 0.51 -0.3 41,979 - GFF6731 0.51 -0.7 42,175 + GFF6731 0.72 +1.3 42,175 + GFF6731 0.72 -2.2 42,176 - GFF6731 0.72 -0.0 42,221 + GFF6731 0.77 -0.2 42,221 + GFF6731 0.77 +0.6 42,222 - GFF6731 0.77 +0.2 42,222 - GFF6731 0.77 +2.5 42,311 + GFF6731 0.87 -0.0 42,312 - GFF6731 0.87 -0.6 42,490 + -0.8 42,490 + -0.7 42,491 - +0.3 42,523 + GFF6732 0.10 -5.3 42,526 + GFF6732 0.11 +0.1 42,526 + GFF6732 0.11 -0.5 42,526 + GFF6732 0.11 -0.1 42,526 + GFF6732 0.11 +1.3 42,526 + GFF6732 0.11 -0.8 42,527 - GFF6732 0.11 +0.6 42,527 - GFF6732 0.11 -0.5 42,527 - GFF6732 0.11 -0.9 42,527 - GFF6732 0.11 +1.6 42,632 - GFF6732 0.23 +0.9 42,632 - GFF6732 0.23 -2.3 42,662 - GFF6732 0.26 +1.8 43,219 + GFF6732 0.90 +0.0 43,253 - -0.0 43,253 - +1.0
Or see this region's nucleotide sequence