Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6713 and GFF6714 overlap by 4 nucleotides GFF6714 and GFF6715 are separated by 10 nucleotides GFF6715 and GFF6716 overlap by 8 nucleotides
GFF6713 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 21,327 to 22,304
GFF6713
GFF6714 - Putative cryptic D-serine deaminase (EC 4.3.1.18), at 22,301 to 23,617
GFF6714
GFF6715 - Transcriptional regulator of RpiR family in catabolic operon, at 23,628 to 24,527
GFF6715
GFF6716 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 24,520 to 26,001
GFF6716
Position (kb) 22
23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 21.312 kb on + strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.373 kb on - strand at 21.485 kb on - strand, within GFF6713 at 21.485 kb on - strand, within GFF6713 at 21.485 kb on - strand, within GFF6713 at 22.002 kb on + strand, within GFF6713 at 22.003 kb on - strand, within GFF6713 at 22.003 kb on - strand, within GFF6713 at 22.066 kb on - strand, within GFF6713 at 22.257 kb on + strand at 22.258 kb on - strand at 22.258 kb on - strand at 22.258 kb on - strand at 22.269 kb on - strand at 22.666 kb on + strand, within GFF6714 at 22.822 kb on - strand, within GFF6714 at 22.822 kb on - strand, within GFF6714 at 22.822 kb on - strand, within GFF6714 at 22.952 kb on + strand, within GFF6714 at 22.952 kb on + strand, within GFF6714 at 22.952 kb on + strand, within GFF6714 at 22.998 kb on - strand, within GFF6714 at 22.998 kb on - strand, within GFF6714 at 23.177 kb on + strand, within GFF6714 at 23.177 kb on + strand, within GFF6714 at 23.177 kb on + strand, within GFF6714 at 23.178 kb on - strand, within GFF6714 at 23.178 kb on - strand, within GFF6714 at 23.178 kb on - strand, within GFF6714 at 23.457 kb on - strand, within GFF6714 at 23.663 kb on - strand at 24.034 kb on - strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.124 kb on - strand, within GFF6715 at 24.354 kb on + strand, within GFF6715 at 24.354 kb on + strand, within GFF6715 at 24.382 kb on + strand, within GFF6715 at 24.382 kb on + strand, within GFF6715
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 21,312 + -2.3 21,313 - -0.4 21,313 - -3.2 21,313 - +0.5 21,313 - +0.9 21,313 - +0.4 21,313 - +0.6 21,313 - -0.1 21,373 - -0.2 21,485 - GFF6713 0.16 -2.6 21,485 - GFF6713 0.16 -2.5 21,485 - GFF6713 0.16 +1.2 22,002 + GFF6713 0.69 +0.1 22,003 - GFF6713 0.69 -0.4 22,003 - GFF6713 0.69 +0.5 22,066 - GFF6713 0.76 +3.5 22,257 + +1.4 22,258 - -0.7 22,258 - -1.8 22,258 - -1.7 22,269 - -0.7 22,666 + GFF6714 0.28 +1.2 22,822 - GFF6714 0.40 +2.1 22,822 - GFF6714 0.40 +0.3 22,822 - GFF6714 0.40 -2.0 22,952 + GFF6714 0.49 +1.4 22,952 + GFF6714 0.49 -2.3 22,952 + GFF6714 0.49 +0.4 22,998 - GFF6714 0.53 -1.5 22,998 - GFF6714 0.53 +0.9 23,177 + GFF6714 0.67 +0.8 23,177 + GFF6714 0.67 +0.8 23,177 + GFF6714 0.67 -0.9 23,178 - GFF6714 0.67 -2.2 23,178 - GFF6714 0.67 -2.0 23,178 - GFF6714 0.67 -1.3 23,457 - GFF6714 0.88 -1.5 23,663 - -2.5 24,034 - GFF6715 0.45 -2.8 24,123 + GFF6715 0.55 -1.4 24,123 + GFF6715 0.55 -2.2 24,123 + GFF6715 0.55 -0.1 24,124 - GFF6715 0.55 -0.4 24,354 + GFF6715 0.81 -0.1 24,354 + GFF6715 0.81 -1.0 24,382 + GFF6715 0.84 -1.2 24,382 + GFF6715 0.84 -1.3
Or see this region's nucleotide sequence