Strain Fitness in Variovorax sp. SCN45 around GFF6713

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
20,939	+		GFF6712	0.69	+1.2
21,002	+		GFF6712	0.75	-1.4
21,003	-		GFF6712	0.75	+1.1
21,312	+				-2.3
21,313	-				-0.4
21,313	-				-3.2
21,313	-				+0.5
21,313	-				+0.9
21,313	-				+0.4
21,313	-				+0.6
21,313	-				-0.1
21,373	-				-0.2
21,485	-		GFF6713	0.16	-2.6
21,485	-		GFF6713	0.16	-2.5
21,485	-		GFF6713	0.16	+1.2
22,002	+		GFF6713	0.69	+0.1
22,003	-		GFF6713	0.69	-0.4
22,003	-		GFF6713	0.69	+0.5
22,066	-		GFF6713	0.76	+3.5
22,257	+				+1.4
22,258	-				-0.7
22,258	-				-1.8
22,258	-				-1.7
22,269	-				-0.7
22,666	+		GFF6714	0.28	+1.2
22,822	-		GFF6714	0.40	+2.1
22,822	-		GFF6714	0.40	+0.3
22,822	-		GFF6714	0.40	-2.0
22,952	+		GFF6714	0.49	+1.4
22,952	+		GFF6714	0.49	-2.3
22,952	+		GFF6714	0.49	+0.4
22,998	-		GFF6714	0.53	-1.5
22,998	-		GFF6714	0.53	+0.9
23,177	+		GFF6714	0.67	+0.8
23,177	+		GFF6714	0.67	+0.8
23,177	+		GFF6714	0.67	-0.9
23,178	-		GFF6714	0.67	-2.2
23,178	-		GFF6714	0.67	-2.0
23,178	-		GFF6714	0.67	-1.3