Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6595 and GFF6596 overlap by 23 nucleotides GFF6596 and GFF6597 are separated by 1 nucleotides
GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082
GFF6595
GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175
GFF6596
GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478
GFF6597
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 39.427 kb on - strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 40.094 kb on + strand at 40.094 kb on + strand at 40.371 kb on + strand, within GFF6596 at 40.469 kb on + strand, within GFF6596 at 40.510 kb on + strand, within GFF6596 at 40.581 kb on - strand, within GFF6596 at 40.641 kb on - strand, within GFF6596 at 40.646 kb on + strand, within GFF6596 at 40.932 kb on - strand, within GFF6596 at 40.960 kb on + strand, within GFF6596 at 41.333 kb on + strand, within GFF6597 at 41.333 kb on + strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 42.007 kb on - strand, within GFF6597
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 39,427 - GFF6595 0.56 -1.3 39,630 + GFF6595 0.70 -2.0 39,630 + GFF6595 0.70 -1.3 39,630 + GFF6595 0.70 -1.1 39,630 + GFF6595 0.70 -0.6 39,630 + GFF6595 0.70 -0.9 39,631 - GFF6595 0.70 -1.5 39,631 - GFF6595 0.70 +0.6 39,631 - GFF6595 0.70 +0.9 39,709 - GFF6595 0.75 -2.2 39,709 - GFF6595 0.75 +0.2 40,094 + -0.6 40,094 + -1.3 40,371 + GFF6596 0.28 -2.4 40,469 + GFF6596 0.37 -2.7 40,510 + GFF6596 0.40 +1.1 40,581 - GFF6596 0.47 -1.3 40,641 - GFF6596 0.52 -0.1 40,646 + GFF6596 0.53 +0.1 40,932 - GFF6596 0.78 -1.2 40,960 + GFF6596 0.81 +0.1 41,333 + GFF6597 0.12 -0.9 41,333 + GFF6597 0.12 +0.9 41,903 - GFF6597 0.56 +0.4 41,903 - GFF6597 0.56 +0.1 42,007 - GFF6597 0.64 -0.9
Or see this region's nucleotide sequence