Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6508 and GFF6509 are separated by 263 nucleotides GFF6509 and GFF6510 are separated by 111 nucleotides
GFF6508 - hypothetical protein, at 2,624 to 3,850
GFF6508
GFF6509 - hypothetical protein, at 4,114 to 4,668
GFF6509
GFF6510 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 4,780 to 6,969
GFF6510
Position (kb) 4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3.125 kb on - strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.130 kb on + strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.131 kb on - strand, within GFF6508 at 3.132 kb on + strand, within GFF6508 at 3.132 kb on + strand, within GFF6508 at 3.132 kb on + strand, within GFF6508 at 3.132 kb on + strand, within GFF6508 at 3.132 kb on + strand, within GFF6508 at 3.133 kb on - strand, within GFF6508 at 3.133 kb on - strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.174 kb on + strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.175 kb on - strand, within GFF6508 at 3.237 kb on + strand, within GFF6508 at 3.357 kb on + strand, within GFF6508 at 3.357 kb on + strand, within GFF6508 at 3.357 kb on + strand, within GFF6508 at 3.357 kb on + strand, within GFF6508 at 3.358 kb on - strand, within GFF6508 at 3.358 kb on - strand, within GFF6508 at 3.358 kb on - strand, within GFF6508 at 3.367 kb on - strand, within GFF6508 at 3.426 kb on + strand, within GFF6508 at 3.426 kb on + strand, within GFF6508 at 3.427 kb on - strand, within GFF6508 at 3.514 kb on - strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.531 kb on + strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.532 kb on - strand, within GFF6508 at 3.735 kb on + strand at 3.735 kb on + strand at 3.736 kb on - strand at 3.771 kb on + strand at 3.771 kb on + strand at 3.771 kb on + strand at 3.771 kb on + strand at 3.771 kb on + strand at 3.772 kb on - strand at 3.772 kb on - strand at 3.809 kb on + strand at 3.809 kb on + strand at 3.809 kb on + strand at 3.809 kb on + strand at 3.810 kb on - strand at 3.810 kb on - strand at 3.810 kb on - strand at 3.862 kb on - strand at 3.862 kb on - strand at 3.985 kb on + strand at 3.985 kb on + strand at 3.985 kb on + strand at 4.022 kb on + strand at 4.026 kb on + strand at 4.026 kb on + strand at 4.026 kb on + strand at 4.027 kb on - strand at 4.039 kb on - strand at 4.100 kb on + strand at 4.346 kb on - strand, within GFF6509 at 4.403 kb on - strand, within GFF6509 at 4.438 kb on + strand, within GFF6509 at 4.438 kb on + strand, within GFF6509 at 4.439 kb on - strand, within GFF6509 at 4.543 kb on + strand, within GFF6509 at 4.543 kb on + strand, within GFF6509 at 4.543 kb on + strand, within GFF6509 at 4.544 kb on - strand, within GFF6509 at 4.544 kb on - strand, within GFF6509 at 4.544 kb on - strand, within GFF6509 at 4.609 kb on + strand, within GFF6509 at 4.609 kb on + strand, within GFF6509 at 4.609 kb on + strand, within GFF6509 at 4.610 kb on - strand, within GFF6509 at 4.610 kb on - strand, within GFF6509 at 4.610 kb on - strand, within GFF6509 at 4.610 kb on - strand, within GFF6509 at 4.721 kb on + strand at 4.721 kb on + strand at 4.721 kb on + strand at 4.722 kb on - strand at 4.722 kb on - strand at 4.764 kb on + strand at 4.765 kb on - strand at 4.765 kb on - strand at 4.765 kb on - strand at 4.765 kb on - strand at 4.765 kb on - strand at 4.765 kb on - strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.786 kb on - strand at 4.786 kb on - strand at 4.786 kb on - strand at 4.786 kb on - strand at 4.786 kb on - strand at 4.786 kb on - strand at 4.786 kb on - strand at 5.050 kb on + strand, within GFF6510 at 5.051 kb on - strand, within GFF6510 at 5.051 kb on - strand, within GFF6510 at 5.051 kb on - strand, within GFF6510 at 5.051 kb on - strand, within GFF6510 at 5.152 kb on - strand, within GFF6510 at 5.185 kb on + strand, within GFF6510 at 5.185 kb on + strand, within GFF6510 at 5.185 kb on + strand, within GFF6510 at 5.185 kb on + strand, within GFF6510 at 5.185 kb on + strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.186 kb on - strand, within GFF6510 at 5.188 kb on + strand, within GFF6510 at 5.189 kb on - strand, within GFF6510 at 5.189 kb on - strand, within GFF6510 at 5.269 kb on + strand, within GFF6510 at 5.269 kb on + strand, within GFF6510 at 5.269 kb on + strand, within GFF6510 at 5.269 kb on + strand, within GFF6510 at 5.269 kb on + strand, within GFF6510 at 5.270 kb on - strand, within GFF6510 at 5.270 kb on - strand, within GFF6510 at 5.422 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.497 kb on + strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.498 kb on - strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.503 kb on + strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.504 kb on - strand, within GFF6510 at 5.515 kb on + strand, within GFF6510 at 5.515 kb on + strand, within GFF6510 at 5.627 kb on - strand, within GFF6510 at 5.647 kb on + strand, within GFF6510 at 5.648 kb on - strand, within GFF6510
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 3,125 - GFF6508 0.41 -1.6 3,130 + GFF6508 0.41 -0.3 3,130 + GFF6508 0.41 -0.9 3,130 + GFF6508 0.41 -2.2 3,130 + GFF6508 0.41 +0.1 3,130 + GFF6508 0.41 -0.8 3,130 + GFF6508 0.41 -1.5 3,130 + GFF6508 0.41 -1.2 3,130 + GFF6508 0.41 -1.3 3,130 + GFF6508 0.41 +1.7 3,130 + GFF6508 0.41 +1.0 3,130 + GFF6508 0.41 -1.4 3,130 + GFF6508 0.41 +1.8 3,131 - GFF6508 0.41 -2.0 3,131 - GFF6508 0.41 +0.2 3,131 - GFF6508 0.41 +0.0 3,131 - GFF6508 0.41 -0.0 3,131 - GFF6508 0.41 -0.8 3,131 - GFF6508 0.41 +0.3 3,131 - GFF6508 0.41 +1.3 3,131 - GFF6508 0.41 -0.1 3,132 + GFF6508 0.41 -2.3 3,132 + GFF6508 0.41 +2.2 3,132 + GFF6508 0.41 -0.1 3,132 + GFF6508 0.41 -2.9 3,132 + GFF6508 0.41 +0.2 3,133 - GFF6508 0.41 +3.4 3,133 - GFF6508 0.41 -0.6 3,174 + GFF6508 0.45 -1.1 3,174 + GFF6508 0.45 -1.6 3,174 + GFF6508 0.45 +1.7 3,174 + GFF6508 0.45 +0.9 3,174 + GFF6508 0.45 -0.6 3,174 + GFF6508 0.45 -0.8 3,174 + GFF6508 0.45 +0.5 3,174 + GFF6508 0.45 -0.8 3,174 + GFF6508 0.45 +1.2 3,175 - GFF6508 0.45 +0.2 3,175 - GFF6508 0.45 -0.7 3,175 - GFF6508 0.45 +0.7 3,175 - GFF6508 0.45 +0.3 3,175 - GFF6508 0.45 -1.0 3,175 - GFF6508 0.45 -0.1 3,175 - GFF6508 0.45 -3.3 3,237 + GFF6508 0.50 -0.2 3,357 + GFF6508 0.60 +0.2 3,357 + GFF6508 0.60 -0.8 3,357 + GFF6508 0.60 -0.9 3,357 + GFF6508 0.60 -0.2 3,358 - GFF6508 0.60 +2.7 3,358 - GFF6508 0.60 +0.7 3,358 - GFF6508 0.60 -0.4 3,367 - GFF6508 0.61 -0.3 3,426 + GFF6508 0.65 -3.8 3,426 + GFF6508 0.65 -2.6 3,427 - GFF6508 0.65 +0.8 3,514 - GFF6508 0.73 -1.4 3,531 + GFF6508 0.74 +0.3 3,531 + GFF6508 0.74 -1.1 3,531 + GFF6508 0.74 +1.3 3,531 + GFF6508 0.74 -0.4 3,531 + GFF6508 0.74 -1.9 3,531 + GFF6508 0.74 +1.3 3,531 + GFF6508 0.74 +2.2 3,531 + GFF6508 0.74 -1.7 3,532 - GFF6508 0.74 -0.8 3,532 - GFF6508 0.74 -0.5 3,532 - GFF6508 0.74 -0.0 3,532 - GFF6508 0.74 -1.8 3,532 - GFF6508 0.74 +0.3 3,532 - GFF6508 0.74 -0.8 3,532 - GFF6508 0.74 +0.6 3,532 - GFF6508 0.74 +0.7 3,532 - GFF6508 0.74 +0.5 3,735 + -0.0 3,735 + -0.3 3,736 - +0.4 3,771 + -1.0 3,771 + -3.6 3,771 + -0.6 3,771 + +2.8 3,771 + -2.2 3,772 - -1.3 3,772 - -0.5 3,809 + -0.3 3,809 + -1.3 3,809 + +1.2 3,809 + +1.4 3,810 - +1.9 3,810 - +0.3 3,810 - -0.3 3,862 - +1.5 3,862 - +2.6 3,985 + -0.7 3,985 + -0.6 3,985 + +0.4 4,022 + +0.6 4,026 + +0.2 4,026 + -0.2 4,026 + -1.2 4,027 - +1.7 4,039 - -3.0 4,100 + -1.7 4,346 - GFF6509 0.42 -0.8 4,403 - GFF6509 0.52 -2.3 4,438 + GFF6509 0.58 -0.5 4,438 + GFF6509 0.58 +0.6 4,439 - GFF6509 0.59 -0.5 4,543 + GFF6509 0.77 -1.6 4,543 + GFF6509 0.77 +0.2 4,543 + GFF6509 0.77 -1.3 4,544 - GFF6509 0.77 -4.4 4,544 - GFF6509 0.77 +0.4 4,544 - GFF6509 0.77 +0.1 4,609 + GFF6509 0.89 +0.9 4,609 + GFF6509 0.89 -0.5 4,609 + GFF6509 0.89 -1.0 4,610 - GFF6509 0.89 -2.8 4,610 - GFF6509 0.89 -2.2 4,610 - GFF6509 0.89 +0.5 4,610 - GFF6509 0.89 -0.6 4,721 + +1.0 4,721 + -0.8 4,721 + +0.9 4,722 - -0.3 4,722 - -0.1 4,764 + -0.6 4,765 - -2.9 4,765 - -1.7 4,765 - +1.2 4,765 - -1.2 4,765 - +0.8 4,765 - -0.1 4,785 + -1.6 4,785 + +0.5 4,786 - +1.7 4,786 - -1.2 4,786 - -0.7 4,786 - -2.8 4,786 - -2.6 4,786 - +1.1 4,786 - -2.0 5,050 + GFF6510 0.12 +1.1 5,051 - GFF6510 0.12 -0.1 5,051 - GFF6510 0.12 +1.9 5,051 - GFF6510 0.12 -0.9 5,051 - GFF6510 0.12 +1.0 5,152 - GFF6510 0.17 +0.7 5,185 + GFF6510 0.18 -0.1 5,185 + GFF6510 0.18 -0.0 5,185 + GFF6510 0.18 -0.6 5,185 + GFF6510 0.18 +1.0 5,185 + GFF6510 0.18 -2.9 5,186 - GFF6510 0.19 -1.3 5,186 - GFF6510 0.19 -0.8 5,186 - GFF6510 0.19 +0.3 5,186 - GFF6510 0.19 -2.2 5,186 - GFF6510 0.19 -1.3 5,186 - GFF6510 0.19 +2.0 5,188 + GFF6510 0.19 -1.4 5,189 - GFF6510 0.19 +0.3 5,189 - GFF6510 0.19 +1.7 5,269 + GFF6510 0.22 -1.7 5,269 + GFF6510 0.22 -0.8 5,269 + GFF6510 0.22 -1.1 5,269 + GFF6510 0.22 +0.7 5,269 + GFF6510 0.22 +2.1 5,270 - GFF6510 0.22 +1.7 5,270 - GFF6510 0.22 -0.1 5,422 + GFF6510 0.29 -1.8 5,497 + GFF6510 0.33 +0.4 5,497 + GFF6510 0.33 -1.4 5,497 + GFF6510 0.33 -0.2 5,497 + GFF6510 0.33 +0.6 5,497 + GFF6510 0.33 -0.8 5,497 + GFF6510 0.33 +0.6 5,497 + GFF6510 0.33 +0.1 5,497 + GFF6510 0.33 -0.6 5,497 + GFF6510 0.33 -0.3 5,497 + GFF6510 0.33 -0.3 5,497 + GFF6510 0.33 -0.3 5,497 + GFF6510 0.33 -0.8 5,497 + GFF6510 0.33 +0.6 5,497 + GFF6510 0.33 +1.1 5,497 + GFF6510 0.33 +1.1 5,497 + GFF6510 0.33 +1.3 5,497 + GFF6510 0.33 +0.7 5,497 + GFF6510 0.33 +0.9 5,497 + GFF6510 0.33 +0.0 5,497 + GFF6510 0.33 -1.0 5,497 + GFF6510 0.33 +1.4 5,497 + GFF6510 0.33 +0.1 5,497 + GFF6510 0.33 +1.1 5,497 + GFF6510 0.33 -3.0 5,498 - GFF6510 0.33 -2.0 5,498 - GFF6510 0.33 -0.7 5,498 - GFF6510 0.33 +1.3 5,498 - GFF6510 0.33 -0.5 5,498 - GFF6510 0.33 +1.3 5,498 - GFF6510 0.33 -3.3 5,498 - GFF6510 0.33 -1.7 5,498 - GFF6510 0.33 -2.3 5,498 - GFF6510 0.33 -1.8 5,498 - GFF6510 0.33 +0.9 5,498 - GFF6510 0.33 +1.4 5,498 - GFF6510 0.33 -0.3 5,498 - GFF6510 0.33 -3.1 5,498 - GFF6510 0.33 +1.3 5,498 - GFF6510 0.33 -1.3 5,498 - GFF6510 0.33 -3.8 5,498 - GFF6510 0.33 -2.5 5,503 + GFF6510 0.33 -0.8 5,503 + GFF6510 0.33 -0.4 5,503 + GFF6510 0.33 +1.2 5,503 + GFF6510 0.33 -1.3 5,503 + GFF6510 0.33 -1.3 5,503 + GFF6510 0.33 -0.2 5,503 + GFF6510 0.33 -2.3 5,503 + GFF6510 0.33 -0.5 5,503 + GFF6510 0.33 +0.7 5,503 + GFF6510 0.33 -1.7 5,503 + GFF6510 0.33 -1.3 5,503 + GFF6510 0.33 +0.5 5,503 + GFF6510 0.33 -1.1 5,503 + GFF6510 0.33 -0.2 5,504 - GFF6510 0.33 +0.6 5,504 - GFF6510 0.33 -3.1 5,504 - GFF6510 0.33 +0.3 5,504 - GFF6510 0.33 +1.2 5,504 - GFF6510 0.33 -0.0 5,504 - GFF6510 0.33 -1.8 5,504 - GFF6510 0.33 +1.2 5,504 - GFF6510 0.33 -0.8 5,504 - GFF6510 0.33 -0.6 5,504 - GFF6510 0.33 +0.5 5,504 - GFF6510 0.33 +1.6 5,504 - GFF6510 0.33 -0.8 5,504 - GFF6510 0.33 -0.6 5,515 + GFF6510 0.34 -0.4 5,515 + GFF6510 0.34 -0.5 5,627 - GFF6510 0.39 -1.0 5,647 + GFF6510 0.40 +1.1 5,648 - GFF6510 0.40 +0.2
Or see this region's nucleotide sequence